Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23506 | 3' | -62.6 | NC_005259.1 | + | 45156 | 0.69 | 0.252618 |
Target: 5'- cGCUCaGGCCGCccuuGGCCUUGuUGCgCGCCGa -3' miRNA: 3'- -CGGG-CUGGUG----UCGGAGC-ACGgGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 47318 | 0.69 | 0.246568 |
Target: 5'- gGCCUGACCgGCGGCCUUGgucaGCcCCGUg- -3' miRNA: 3'- -CGGGCUGG-UGUCGGAGCa---CG-GGCGgu -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 55760 | 0.7 | 0.242996 |
Target: 5'- -aCCGugCGCAGCCgcguacgcgucgagcUCG-GCCCGCUu -3' miRNA: 3'- cgGGCugGUGUCGG---------------AGCaCGGGCGGu -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 37279 | 0.7 | 0.234828 |
Target: 5'- cGCCCGGCaggacuugCAUGGCg--GUGCCCGCCGg -3' miRNA: 3'- -CGGGCUG--------GUGUCGgagCACGGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 24835 | 0.7 | 0.234828 |
Target: 5'- cGCaCCGACCaaGCAGUC-CGUGCgcuaCGCCGa -3' miRNA: 3'- -CG-GGCUGG--UGUCGGaGCACGg---GCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 9779 | 0.7 | 0.234828 |
Target: 5'- gGCUCGACUuCuGCCcggUGUGCCCGCUc -3' miRNA: 3'- -CGGGCUGGuGuCGGa--GCACGGGCGGu -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 18502 | 0.7 | 0.223561 |
Target: 5'- cGCCgaCGACCuCAGCgaUC-UGCCCGCCGa -3' miRNA: 3'- -CGG--GCUGGuGUCGg-AGcACGGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 30185 | 0.7 | 0.223561 |
Target: 5'- cGCCCG--CACAGCaCUaccccgucgGUGCCCGCCGc -3' miRNA: 3'- -CGGGCugGUGUCG-GAg--------CACGGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 56242 | 0.7 | 0.218102 |
Target: 5'- -gCCGACCACguugggaucggcGGCCUUGaGCgCCGCCGc -3' miRNA: 3'- cgGGCUGGUG------------UCGGAGCaCG-GGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 9071 | 0.7 | 0.218102 |
Target: 5'- gGUCaUGGCCACAGCauaggccCGuUGCCCGCCGa -3' miRNA: 3'- -CGG-GCUGGUGUCGga-----GC-ACGGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 9130 | 0.7 | 0.212757 |
Target: 5'- cCCCGGUacggGCAGCCgugcUCGUGCCCGUCGa -3' miRNA: 3'- cGGGCUGg---UGUCGG----AGCACGGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 8158 | 0.71 | 0.202405 |
Target: 5'- uGCuCUGGCCAUGGCCUgaggcuaccccCGUgGCCUGCCGu -3' miRNA: 3'- -CG-GGCUGGUGUCGGA-----------GCA-CGGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 18420 | 0.71 | 0.19493 |
Target: 5'- cGCCCG-CCACcuacgcgcacgacGCCUCGUGCaacaccgcgcacaCCGCCGg -3' miRNA: 3'- -CGGGCuGGUGu------------CGGAGCACG-------------GGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 60106 | 0.71 | 0.193952 |
Target: 5'- aGCUCGACCagcgacucgauaucgGCGGCCUCGUccugcgcggccuuGgCCGCCGc -3' miRNA: 3'- -CGGGCUGG---------------UGUCGGAGCA-------------CgGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 4360 | 0.71 | 0.183009 |
Target: 5'- cGCCgGACgGCAcGCC-CGUGCCCugcucaucGCCAa -3' miRNA: 3'- -CGGgCUGgUGU-CGGaGCACGGG--------CGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 54841 | 0.72 | 0.156999 |
Target: 5'- aGCCCGACCGUAGCaguagGCCCGCUg -3' miRNA: 3'- -CGGGCUGGUGUCGgagcaCGGGCGGu -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 3540 | 0.72 | 0.156999 |
Target: 5'- -aCCGACCACAGCCagauccgCGaGCuuGCCGa -3' miRNA: 3'- cgGGCUGGUGUCGGa------GCaCGggCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 56908 | 0.73 | 0.137927 |
Target: 5'- uGgCCG-CCGCAGCaggCGUGCCCGCg- -3' miRNA: 3'- -CgGGCuGGUGUCGga-GCACGGGCGgu -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 68240 | 0.74 | 0.127528 |
Target: 5'- gGCCUgcucaaggauGACCGCAGCCUUGcGCUCGUCGu -3' miRNA: 3'- -CGGG----------CUGGUGUCGGAGCaCGGGCGGU- -5' |
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23506 | 3' | -62.6 | NC_005259.1 | + | 64752 | 0.74 | 0.126529 |
Target: 5'- cGCCC-ACCGCGccucgcgacggugcGCCUCGgcgGCCCGCUg -3' miRNA: 3'- -CGGGcUGGUGU--------------CGGAGCa--CGGGCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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