miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23506 3' -62.6 NC_005259.1 + 36722 0.67 0.35834
Target:  5'- cGCUCGACC-C-GCCgc--GCCCGCCGg -3'
miRNA:   3'- -CGGGCUGGuGuCGGagcaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 46767 0.67 0.342602
Target:  5'- aCCUGcGCCgACAGCCgc--GCCCGCCGg -3'
miRNA:   3'- cGGGC-UGG-UGUCGGagcaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 22131 0.67 0.342602
Target:  5'- uCCCGcgcaGCCACgucGGCaUCGUGCgCGCCGa -3'
miRNA:   3'- cGGGC----UGGUG---UCGgAGCACGgGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 3471 0.67 0.342602
Target:  5'- uGCCUcaccuccgagGACCACAcccuGCCUCacgcgaccauGUGCgCCGCCGc -3'
miRNA:   3'- -CGGG----------CUGGUGU----CGGAG----------CACG-GGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 4319 0.67 0.334922
Target:  5'- aGCgCGACCAa--CCUCGUGCCgGaCCu -3'
miRNA:   3'- -CGgGCUGGUgucGGAGCACGGgC-GGu -5'
23506 3' -62.6 NC_005259.1 + 55693 0.67 0.334922
Target:  5'- cCCCGuCgGCAGCCUCGUugauGgCCGCgAg -3'
miRNA:   3'- cGGGCuGgUGUCGGAGCA----CgGGCGgU- -5'
23506 3' -62.6 NC_005259.1 + 23615 0.67 0.33416
Target:  5'- cGCgUGGCgGCAGCCagacggcUCGgugugguuucgGCCCGCCGa -3'
miRNA:   3'- -CGgGCUGgUGUCGG-------AGCa----------CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 20137 0.67 0.33416
Target:  5'- uGCCgucgcgaUGACgGCAGCCg-GUGCCCugGCCAc -3'
miRNA:   3'- -CGG-------GCUGgUGUCGGagCACGGG--CGGU- -5'
23506 3' -62.6 NC_005259.1 + 30465 0.68 0.327368
Target:  5'- uGCUCGAUCaaGCAGCCUCGagGUagGCCAg -3'
miRNA:   3'- -CGGGCUGG--UGUCGGAGCa-CGggCGGU- -5'
23506 3' -62.6 NC_005259.1 + 68515 0.68 0.319942
Target:  5'- -gCCGACUuCuGCCgagCGagcUGCCCGCCAc -3'
miRNA:   3'- cgGGCUGGuGuCGGa--GC---ACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 7650 0.68 0.319942
Target:  5'- aGUUCGACCGCcGUCgUCGUGagcgcCCCGCCu -3'
miRNA:   3'- -CGGGCUGGUGuCGG-AGCAC-----GGGCGGu -5'
23506 3' -62.6 NC_005259.1 + 13023 0.68 0.312642
Target:  5'- cGCCCGGCCcCAGCacgccaacacgUUCG-GCCCGUUc -3'
miRNA:   3'- -CGGGCUGGuGUCG-----------GAGCaCGGGCGGu -5'
23506 3' -62.6 NC_005259.1 + 12546 0.68 0.30547
Target:  5'- aGCCCcACgGCAuuGCCggGgugGCCCGCCAg -3'
miRNA:   3'- -CGGGcUGgUGU--CGGagCa--CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 9968 0.68 0.30547
Target:  5'- cGCCCGACCACcGCaccggUCGaggugGCCaGCCGg -3'
miRNA:   3'- -CGGGCUGGUGuCGg----AGCa----CGGgCGGU- -5'
23506 3' -62.6 NC_005259.1 + 61858 0.68 0.30547
Target:  5'- cCUCGGCCACcGCCUCGcgUGCCgCGUg- -3'
miRNA:   3'- cGGGCUGGUGuCGGAGC--ACGG-GCGgu -5'
23506 3' -62.6 NC_005259.1 + 61951 0.68 0.30547
Target:  5'- uGCCgGggccACCGCAGCCUCacGCgCCGCUg -3'
miRNA:   3'- -CGGgC----UGGUGUCGGAGcaCG-GGCGGu -5'
23506 3' -62.6 NC_005259.1 + 14320 0.69 0.284712
Target:  5'- cGCCCucgacGCCGCcGCCcgCGUGCgggCCGCCGa -3'
miRNA:   3'- -CGGGc----UGGUGuCGGa-GCACG---GGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 8367 0.69 0.278045
Target:  5'- cGCUCGGCgGCGGCCUCG-GCaUCGgCGa -3'
miRNA:   3'- -CGGGCUGgUGUCGGAGCaCG-GGCgGU- -5'
23506 3' -62.6 NC_005259.1 + 14486 0.69 0.278045
Target:  5'- gGUCCGAuCCGCuGCUcgGUGCCCGCa- -3'
miRNA:   3'- -CGGGCU-GGUGuCGGagCACGGGCGgu -5'
23506 3' -62.6 NC_005259.1 + 25933 0.69 0.265085
Target:  5'- gGUCCGgugagcgcacGCCGguGCC-CG-GCCCGCCGa -3'
miRNA:   3'- -CGGGC----------UGGUguCGGaGCaCGGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.