Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23507 | 5' | -55.1 | NC_005259.1 | + | 26874 | 0.68 | 0.660878 |
Target: 5'- uUGGUggcccagucgaGCACACCAUCGGUGUUcaucACGGg -3' miRNA: 3'- -ACCA-----------CGUGUGGUAGUCACGGc---UGUCg -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 26331 | 0.66 | 0.746292 |
Target: 5'- gGGUcgcacagauaGCACGCCcUCGG-GCCGAgCuGCg -3' miRNA: 3'- aCCA----------CGUGUGGuAGUCaCGGCU-GuCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 25625 | 0.67 | 0.725399 |
Target: 5'- aGGcGCucUACCAgCAGUGgCGGCAGUc -3' miRNA: 3'- aCCaCGu-GUGGUaGUCACgGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 23470 | 0.7 | 0.510018 |
Target: 5'- cGGgGCcucgGCAUUGUCGGUGCCGAC-GCc -3' miRNA: 3'- aCCaCG----UGUGGUAGUCACGGCUGuCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 22885 | 0.66 | 0.756572 |
Target: 5'- cGGUcgcGCGCugCGUCuGUa-CGACGGCa -3' miRNA: 3'- aCCA---CGUGugGUAGuCAcgGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 22794 | 0.74 | 0.341558 |
Target: 5'- aGGUGCuCACCGagGGUGCCGAUu-- -3' miRNA: 3'- aCCACGuGUGGUagUCACGGCUGucg -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 22519 | 0.68 | 0.659788 |
Target: 5'- -cGUGCGCACCGUC---GCCGGugauuucCAGCa -3' miRNA: 3'- acCACGUGUGGUAGucaCGGCU-------GUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 20532 | 0.68 | 0.64997 |
Target: 5'- gGGUGCGCuGCCcgCAGcgugGUgGAuCAGCa -3' miRNA: 3'- aCCACGUG-UGGuaGUCa---CGgCU-GUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 19470 | 0.71 | 0.478274 |
Target: 5'- -cGUGCGCAuCCGUCAGUucgucaacgaucuGCCGACAc- -3' miRNA: 3'- acCACGUGU-GGUAGUCA-------------CGGCUGUcg -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 19188 | 0.66 | 0.735897 |
Target: 5'- cGGUGCccucgacaGCgaGCUcgUGGUGCgGGCGGCg -3' miRNA: 3'- aCCACG--------UG--UGGuaGUCACGgCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 18315 | 0.71 | 0.473244 |
Target: 5'- cGGUGUgcgACACCGaggcCGGUgcguucguggucgacGCCGACGGCg -3' miRNA: 3'- aCCACG---UGUGGUa---GUCA---------------CGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 17333 | 0.69 | 0.5737 |
Target: 5'- gGGUGUGCcggucaacgucGCCGUCgAG-GUCGGCGGCu -3' miRNA: 3'- aCCACGUG-----------UGGUAG-UCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 17065 | 0.73 | 0.37451 |
Target: 5'- cGGUGCGCGCauuugugCGUCAGgccGCCGAUauugGGCu -3' miRNA: 3'- aCCACGUGUG-------GUAGUCa--CGGCUG----UCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 16490 | 0.69 | 0.562925 |
Target: 5'- aGG-GCGCACCcgCGcgcaugGCCGAgAGCg -3' miRNA: 3'- aCCaCGUGUGGuaGUca----CGGCUgUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 15555 | 0.67 | 0.725399 |
Target: 5'- cGGUGC-CACCcUCAGgugGCCacccucggGGcCAGCg -3' miRNA: 3'- aCCACGuGUGGuAGUCa--CGG--------CU-GUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 15139 | 0.69 | 0.606275 |
Target: 5'- aGGUGUACgggGCCAccUCGGUGgCCGA-GGCc -3' miRNA: 3'- aCCACGUG---UGGU--AGUCAC-GGCUgUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 14520 | 0.66 | 0.734852 |
Target: 5'- cGGcgaGCACGCgGugcguuUCGGUGCCGAguucgucCGGCa -3' miRNA: 3'- aCCa--CGUGUGgU------AGUCACGGCU-------GUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 13095 | 0.66 | 0.756572 |
Target: 5'- cGGUGC-CACCGacccCGGcccGCuCGGCGGCu -3' miRNA: 3'- aCCACGuGUGGUa---GUCa--CG-GCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 12319 | 0.68 | 0.617189 |
Target: 5'- cGGUGCGCACC------GCCGcCAGCu -3' miRNA: 3'- aCCACGUGUGGuagucaCGGCuGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 11743 | 0.67 | 0.71481 |
Target: 5'- aUGGUGCGCAgacggUCAUaGGUGaucaccgacUCGACGGCg -3' miRNA: 3'- -ACCACGUGU-----GGUAgUCAC---------GGCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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