Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23507 | 5' | -55.1 | NC_005259.1 | + | 50073 | 0.67 | 0.704141 |
Target: 5'- gGGUGUAgACCugcggCAGcucGCCGAUGGUg -3' miRNA: 3'- aCCACGUgUGGua---GUCa--CGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 49982 | 0.67 | 0.725399 |
Target: 5'- --uUGCGCGCacggAUCGcGUGCgGACGGCu -3' miRNA: 3'- accACGUGUGg---UAGU-CACGgCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 48201 | 0.66 | 0.746292 |
Target: 5'- cGG-GCAUGCCGUCguAGUGguacgaCCGAUAGUc -3' miRNA: 3'- aCCaCGUGUGGUAG--UCAC------GGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 47156 | 0.66 | 0.750418 |
Target: 5'- -cGUGCGCagcagaucACCGUagcggcgaaggucggCGGUGCCGuCGGCg -3' miRNA: 3'- acCACGUG--------UGGUA---------------GUCACGGCuGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 44410 | 0.68 | 0.67176 |
Target: 5'- cGGUGCcCGCCugaccggCAGcGCCGAuacCGGCc -3' miRNA: 3'- aCCACGuGUGGua-----GUCaCGGCU---GUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 41857 | 0.67 | 0.708417 |
Target: 5'- cGGUGUcccacucgacgggcaGCACCGUggCGG-GCCGAUAcGCa -3' miRNA: 3'- aCCACG---------------UGUGGUA--GUCaCGGCUGU-CG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 40549 | 0.66 | 0.765718 |
Target: 5'- gUGGUagucgacGCGCGCCcgcgCGGUGUugcuguCGGCGGCu -3' miRNA: 3'- -ACCA-------CGUGUGGua--GUCACG------GCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 40137 | 0.66 | 0.76065 |
Target: 5'- cGGgcgaGCuCGCCGUCGGUugucggugcccgccCCGGCAGCu -3' miRNA: 3'- aCCa---CGuGUGGUAGUCAc-------------GGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 37300 | 0.67 | 0.682604 |
Target: 5'- cGGUGCcCGCCggGUCAGca--GACAGCg -3' miRNA: 3'- aCCACGuGUGG--UAGUCacggCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 36899 | 0.72 | 0.436891 |
Target: 5'- cGGUGaGCGCCccacugacggggauAUC-GUGCCGACGGUg -3' miRNA: 3'- aCCACgUGUGG--------------UAGuCACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 35679 | 0.66 | 0.776746 |
Target: 5'- gUGGUGCACAgCGacgCcGUGCC--CGGCg -3' miRNA: 3'- -ACCACGUGUgGUa--GuCACGGcuGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 34554 | 0.75 | 0.273723 |
Target: 5'- ---aGCuuGCCGUCGGgGCCGACGGCg -3' miRNA: 3'- accaCGugUGGUAGUCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 34161 | 0.7 | 0.499678 |
Target: 5'- gUGGUGC-C-CCAcCAGUGCCGgaacacaccggGCAGUg -3' miRNA: 3'- -ACCACGuGuGGUaGUCACGGC-----------UGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 32980 | 0.68 | 0.617189 |
Target: 5'- gGGUGCcgAUGCCGagGGUGCCGcCAcGCc -3' miRNA: 3'- aCCACG--UGUGGUagUCACGGCuGU-CG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 30194 | 0.66 | 0.766728 |
Target: 5'- ---aGCACuaccCCGUCGGUGCCcGCcGCg -3' miRNA: 3'- accaCGUGu---GGUAGUCACGGcUGuCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 28622 | 0.66 | 0.786617 |
Target: 5'- aUGGccaagGCcaAgGCCAcCGGUGCCGACAccGCc -3' miRNA: 3'- -ACCa----CG--UgUGGUaGUCACGGCUGU--CG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 28301 | 0.68 | 0.659788 |
Target: 5'- cGGUGC-CGCCcugcgcagcguagAUCGGUGUgccguccuUGGCGGCg -3' miRNA: 3'- aCCACGuGUGG-------------UAGUCACG--------GCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 28115 | 0.68 | 0.67176 |
Target: 5'- cGGUcGaUugACCGUUcGUGCCGACguaGGCg -3' miRNA: 3'- aCCA-C-GugUGGUAGuCACGGCUG---UCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 27371 | 0.76 | 0.253642 |
Target: 5'- uUGGUGCccgGCACgGUgaccggcggCGGUGUCGGCAGCg -3' miRNA: 3'- -ACCACG---UGUGgUA---------GUCACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 26962 | 0.66 | 0.766728 |
Target: 5'- -cGUGCGCAgCG-CcGUGCCGAacuCGGCg -3' miRNA: 3'- acCACGUGUgGUaGuCACGGCU---GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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