miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 15555 0.67 0.725399
Target:  5'- cGGUGC-CACCcUCAGgugGCCacccucggGGcCAGCg -3'
miRNA:   3'- aCCACGuGUGGuAGUCa--CGG--------CU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 16490 0.69 0.562925
Target:  5'- aGG-GCGCACCcgCGcgcaugGCCGAgAGCg -3'
miRNA:   3'- aCCaCGUGUGGuaGUca----CGGCUgUCG- -5'
23507 5' -55.1 NC_005259.1 + 17065 0.73 0.37451
Target:  5'- cGGUGCGCGCauuugugCGUCAGgccGCCGAUauugGGCu -3'
miRNA:   3'- aCCACGUGUG-------GUAGUCa--CGGCUG----UCG- -5'
23507 5' -55.1 NC_005259.1 + 17333 0.69 0.5737
Target:  5'- gGGUGUGCcggucaacgucGCCGUCgAG-GUCGGCGGCu -3'
miRNA:   3'- aCCACGUG-----------UGGUAG-UCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 18315 0.71 0.473244
Target:  5'- cGGUGUgcgACACCGaggcCGGUgcguucguggucgacGCCGACGGCg -3'
miRNA:   3'- aCCACG---UGUGGUa---GUCA---------------CGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 19188 0.66 0.735897
Target:  5'- cGGUGCccucgacaGCgaGCUcgUGGUGCgGGCGGCg -3'
miRNA:   3'- aCCACG--------UG--UGGuaGUCACGgCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 19470 0.71 0.478274
Target:  5'- -cGUGCGCAuCCGUCAGUucgucaacgaucuGCCGACAc- -3'
miRNA:   3'- acCACGUGU-GGUAGUCA-------------CGGCUGUcg -5'
23507 5' -55.1 NC_005259.1 + 20532 0.68 0.64997
Target:  5'- gGGUGCGCuGCCcgCAGcgugGUgGAuCAGCa -3'
miRNA:   3'- aCCACGUG-UGGuaGUCa---CGgCU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 22519 0.68 0.659788
Target:  5'- -cGUGCGCACCGUC---GCCGGugauuucCAGCa -3'
miRNA:   3'- acCACGUGUGGUAGucaCGGCU-------GUCG- -5'
23507 5' -55.1 NC_005259.1 + 22794 0.74 0.341558
Target:  5'- aGGUGCuCACCGagGGUGCCGAUu-- -3'
miRNA:   3'- aCCACGuGUGGUagUCACGGCUGucg -5'
23507 5' -55.1 NC_005259.1 + 22885 0.66 0.756572
Target:  5'- cGGUcgcGCGCugCGUCuGUa-CGACGGCa -3'
miRNA:   3'- aCCA---CGUGugGUAGuCAcgGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 23470 0.7 0.510018
Target:  5'- cGGgGCcucgGCAUUGUCGGUGCCGAC-GCc -3'
miRNA:   3'- aCCaCG----UGUGGUAGUCACGGCUGuCG- -5'
23507 5' -55.1 NC_005259.1 + 25625 0.67 0.725399
Target:  5'- aGGcGCucUACCAgCAGUGgCGGCAGUc -3'
miRNA:   3'- aCCaCGu-GUGGUaGUCACgGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 26331 0.66 0.746292
Target:  5'- gGGUcgcacagauaGCACGCCcUCGG-GCCGAgCuGCg -3'
miRNA:   3'- aCCA----------CGUGUGGuAGUCaCGGCU-GuCG- -5'
23507 5' -55.1 NC_005259.1 + 26874 0.68 0.660878
Target:  5'- uUGGUggcccagucgaGCACACCAUCGGUGUUcaucACGGg -3'
miRNA:   3'- -ACCA-----------CGUGUGGUAGUCACGGc---UGUCg -5'
23507 5' -55.1 NC_005259.1 + 26962 0.66 0.766728
Target:  5'- -cGUGCGCAgCG-CcGUGCCGAacuCGGCg -3'
miRNA:   3'- acCACGUGUgGUaGuCACGGCU---GUCG- -5'
23507 5' -55.1 NC_005259.1 + 27371 0.76 0.253642
Target:  5'- uUGGUGCccgGCACgGUgaccggcggCGGUGUCGGCAGCg -3'
miRNA:   3'- -ACCACG---UGUGgUA---------GUCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 28115 0.68 0.67176
Target:  5'- cGGUcGaUugACCGUUcGUGCCGACguaGGCg -3'
miRNA:   3'- aCCA-C-GugUGGUAGuCACGGCUG---UCG- -5'
23507 5' -55.1 NC_005259.1 + 28301 0.68 0.659788
Target:  5'- cGGUGC-CGCCcugcgcagcguagAUCGGUGUgccguccuUGGCGGCg -3'
miRNA:   3'- aCCACGuGUGG-------------UAGUCACG--------GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 28622 0.66 0.786617
Target:  5'- aUGGccaagGCcaAgGCCAcCGGUGCCGACAccGCc -3'
miRNA:   3'- -ACCa----CG--UgUGGUaGUCACGGCUGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.