miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 19470 0.71 0.478274
Target:  5'- -cGUGCGCAuCCGUCAGUucgucaacgaucuGCCGACAc- -3'
miRNA:   3'- acCACGUGU-GGUAGUCA-------------CGGCUGUcg -5'
23507 5' -55.1 NC_005259.1 + 56156 0.7 0.498649
Target:  5'- cGGUcgagcacguccucGUugGCCA-CGGUGCCGACAuacGCg -3'
miRNA:   3'- aCCA-------------CGugUGGUaGUCACGGCUGU---CG- -5'
23507 5' -55.1 NC_005259.1 + 34161 0.7 0.499678
Target:  5'- gUGGUGC-C-CCAcCAGUGCCGgaacacaccggGCAGUg -3'
miRNA:   3'- -ACCACGuGuGGUaGUCACGGC-----------UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 67403 0.7 0.510018
Target:  5'- gGGUGUcacgggccgACACCAUCggGGUGCCG--GGCu -3'
miRNA:   3'- aCCACG---------UGUGGUAG--UCACGGCugUCG- -5'
23507 5' -55.1 NC_005259.1 + 23470 0.7 0.510018
Target:  5'- cGGgGCcucgGCAUUGUCGGUGCCGAC-GCc -3'
miRNA:   3'- aCCaCG----UGUGGUAGUCACGGCUGuCG- -5'
23507 5' -55.1 NC_005259.1 + 60558 0.7 0.520448
Target:  5'- ---gGCAUGCC--CGGUGCCGACGGUc -3'
miRNA:   3'- accaCGUGUGGuaGUCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 8294 0.7 0.545802
Target:  5'- cGG-GCACccgcacggaaacgccGCCuuGUCGGagcUGCCGACGGCg -3'
miRNA:   3'- aCCaCGUG---------------UGG--UAGUC---ACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 16490 0.69 0.562925
Target:  5'- aGG-GCGCACCcgCGcgcaugGCCGAgAGCg -3'
miRNA:   3'- aCCaCGUGUGGuaGUca----CGGCUgUCG- -5'
23507 5' -55.1 NC_005259.1 + 17333 0.69 0.5737
Target:  5'- gGGUGUGCcggucaacgucGCCGUCgAG-GUCGGCGGCu -3'
miRNA:   3'- aCCACGUG-----------UGGUAG-UCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 61171 0.69 0.584522
Target:  5'- cGGUGUACGCC-UCGGUauggcccucGCCGGuCuGCu -3'
miRNA:   3'- aCCACGUGUGGuAGUCA---------CGGCU-GuCG- -5'
23507 5' -55.1 NC_005259.1 + 4609 0.69 0.606275
Target:  5'- ---gGCACGCUGUCGG-GCCGGUGGCg -3'
miRNA:   3'- accaCGUGUGGUAGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 15139 0.69 0.606275
Target:  5'- aGGUGUACgggGCCAccUCGGUGgCCGA-GGCc -3'
miRNA:   3'- aCCACGUG---UGGU--AGUCAC-GGCUgUCG- -5'
23507 5' -55.1 NC_005259.1 + 32980 0.68 0.617189
Target:  5'- gGGUGCcgAUGCCGagGGUGCCGcCAcGCc -3'
miRNA:   3'- aCCACG--UGUGGUagUCACGGCuGU-CG- -5'
23507 5' -55.1 NC_005259.1 + 68789 0.68 0.617189
Target:  5'- aGGUcGUACGCCGgggCGGUGUCGGugccCGGUa -3'
miRNA:   3'- aCCA-CGUGUGGUa--GUCACGGCU----GUCG- -5'
23507 5' -55.1 NC_005259.1 + 12319 0.68 0.617189
Target:  5'- cGGUGCGCACC------GCCGcCAGCu -3'
miRNA:   3'- aCCACGUGUGGuagucaCGGCuGUCG- -5'
23507 5' -55.1 NC_005259.1 + 2151 0.68 0.62593
Target:  5'- cGGUGCugGCCAgCGGcgucgagccgccgguUGCCGAggucaugggccgcuaCGGCa -3'
miRNA:   3'- aCCACGugUGGUaGUC---------------ACGGCU---------------GUCG- -5'
23507 5' -55.1 NC_005259.1 + 20532 0.68 0.64997
Target:  5'- gGGUGCGCuGCCcgCAGcgugGUgGAuCAGCa -3'
miRNA:   3'- aCCACGUG-UGGuaGUCa---CGgCU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 60258 0.68 0.64997
Target:  5'- gGGUGCAaggcugGCCAcCAGcgcUGCCgGGCGGCc -3'
miRNA:   3'- aCCACGUg-----UGGUaGUC---ACGG-CUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 22519 0.68 0.659788
Target:  5'- -cGUGCGCACCGUC---GCCGGugauuucCAGCa -3'
miRNA:   3'- acCACGUGUGGUAGucaCGGCU-------GUCG- -5'
23507 5' -55.1 NC_005259.1 + 28301 0.68 0.659788
Target:  5'- cGGUGC-CGCCcugcgcagcguagAUCGGUGUgccguccuUGGCGGCg -3'
miRNA:   3'- aCCACGuGUGG-------------UAGUCACG--------GCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.