miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 14520 0.66 0.734852
Target:  5'- cGGcgaGCACGCgGugcguuUCGGUGCCGAguucgucCGGCa -3'
miRNA:   3'- aCCa--CGUGUGgU------AGUCACGGCU-------GUCG- -5'
23507 5' -55.1 NC_005259.1 + 15555 0.67 0.725399
Target:  5'- cGGUGC-CACCcUCAGgugGCCacccucggGGcCAGCg -3'
miRNA:   3'- aCCACGuGUGGuAGUCa--CGG--------CU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 7432 0.67 0.725399
Target:  5'- cGGUGCccGCGCCGcauggCAGcGCCGAggaUGGCu -3'
miRNA:   3'- aCCACG--UGUGGUa----GUCaCGGCU---GUCG- -5'
23507 5' -55.1 NC_005259.1 + 49982 0.67 0.725399
Target:  5'- --uUGCGCGCacggAUCGcGUGCgGACGGCu -3'
miRNA:   3'- accACGUGUGg---UAGU-CACGgCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 25625 0.67 0.725399
Target:  5'- aGGcGCucUACCAgCAGUGgCGGCAGUc -3'
miRNA:   3'- aCCaCGu-GUGGUaGUCACgGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 11743 0.67 0.71481
Target:  5'- aUGGUGCGCAgacggUCAUaGGUGaucaccgacUCGACGGCg -3'
miRNA:   3'- -ACCACGUGU-----GGUAgUCAC---------GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 41857 0.67 0.708417
Target:  5'- cGGUGUcccacucgacgggcaGCACCGUggCGG-GCCGAUAcGCa -3'
miRNA:   3'- aCCACG---------------UGUGGUA--GUCaCGGCUGU-CG- -5'
23507 5' -55.1 NC_005259.1 + 50073 0.67 0.704141
Target:  5'- gGGUGUAgACCugcggCAGcucGCCGAUGGUg -3'
miRNA:   3'- aCCACGUgUGGua---GUCa--CGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 8950 0.67 0.700926
Target:  5'- gUGG-GCGCGCCGUgGacgggcaccGUGCCGggacguaggugccaGCGGCg -3'
miRNA:   3'- -ACCaCGUGUGGUAgU---------CACGGC--------------UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 57287 0.67 0.693402
Target:  5'- cGGUG-GCACCucgUAGUGCaCGACAucgaGCa -3'
miRNA:   3'- aCCACgUGUGGua-GUCACG-GCUGU----CG- -5'
23507 5' -55.1 NC_005259.1 + 37300 0.67 0.682604
Target:  5'- cGGUGCcCGCCggGUCAGca--GACAGCg -3'
miRNA:   3'- aCCACGuGUGG--UAGUCacggCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 28115 0.68 0.67176
Target:  5'- cGGUcGaUugACCGUUcGUGCCGACguaGGCg -3'
miRNA:   3'- aCCA-C-GugUGGUAGuCACGGCUG---UCG- -5'
23507 5' -55.1 NC_005259.1 + 44410 0.68 0.67176
Target:  5'- cGGUGCcCGCCugaccggCAGcGCCGAuacCGGCc -3'
miRNA:   3'- aCCACGuGUGGua-----GUCaCGGCU---GUCG- -5'
23507 5' -55.1 NC_005259.1 + 57453 0.68 0.67176
Target:  5'- uUGGUGCgACGCUgcggCAG-GCCGGUGGCa -3'
miRNA:   3'- -ACCACG-UGUGGua--GUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 26874 0.68 0.660878
Target:  5'- uUGGUggcccagucgaGCACACCAUCGGUGUUcaucACGGg -3'
miRNA:   3'- -ACCA-----------CGUGUGGUAGUCACGGc---UGUCg -5'
23507 5' -55.1 NC_005259.1 + 22519 0.68 0.659788
Target:  5'- -cGUGCGCACCGUC---GCCGGugauuucCAGCa -3'
miRNA:   3'- acCACGUGUGGUAGucaCGGCU-------GUCG- -5'
23507 5' -55.1 NC_005259.1 + 28301 0.68 0.659788
Target:  5'- cGGUGC-CGCCcugcgcagcguagAUCGGUGUgccguccuUGGCGGCg -3'
miRNA:   3'- aCCACGuGUGG-------------UAGUCACG--------GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 20532 0.68 0.64997
Target:  5'- gGGUGCGCuGCCcgCAGcgugGUgGAuCAGCa -3'
miRNA:   3'- aCCACGUG-UGGuaGUCa---CGgCU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 60258 0.68 0.64997
Target:  5'- gGGUGCAaggcugGCCAcCAGcgcUGCCgGGCGGCc -3'
miRNA:   3'- aCCACGUg-----UGGUaGUC---ACGG-CUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 2151 0.68 0.62593
Target:  5'- cGGUGCugGCCAgCGGcgucgagccgccgguUGCCGAggucaugggccgcuaCGGCa -3'
miRNA:   3'- aCCACGugUGGUaGUC---------------ACGGCU---------------GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.