miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 742 0.72 0.402196
Target:  5'- cGGUGCcuACGCCGcCGGUGCCuACcGCg -3'
miRNA:   3'- aCCACG--UGUGGUaGUCACGGcUGuCG- -5'
23507 5' -55.1 NC_005259.1 + 846 0.66 0.766728
Target:  5'- aGGU-CGCugCG-CAG-GCCGAguGCg -3'
miRNA:   3'- aCCAcGUGugGUaGUCaCGGCUguCG- -5'
23507 5' -55.1 NC_005259.1 + 2018 0.8 0.129933
Target:  5'- gGGUgGCGCACCGgcaccUCAGUGCgGugGGCg -3'
miRNA:   3'- aCCA-CGUGUGGU-----AGUCACGgCugUCG- -5'
23507 5' -55.1 NC_005259.1 + 2151 0.68 0.62593
Target:  5'- cGGUGCugGCCAgCGGcgucgagccgccgguUGCCGAggucaugggccgcuaCGGCa -3'
miRNA:   3'- aCCACGugUGGUaGUC---------------ACGGCU---------------GUCG- -5'
23507 5' -55.1 NC_005259.1 + 3741 0.78 0.190214
Target:  5'- cGGUcGCACgACCuAUCAG-GUCGACAGCg -3'
miRNA:   3'- aCCA-CGUG-UGG-UAGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 4609 0.69 0.606275
Target:  5'- ---gGCACGCUGUCGG-GCCGGUGGCg -3'
miRNA:   3'- accaCGUGUGGUAGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 4671 0.78 0.195351
Target:  5'- cGGUGUcuGCACUGgcUCGG-GCCGACAGCu -3'
miRNA:   3'- aCCACG--UGUGGU--AGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 5706 0.66 0.776746
Target:  5'- -cGUGC-CGCCAaggcCAGcGCCGgACGGCg -3'
miRNA:   3'- acCACGuGUGGUa---GUCaCGGC-UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 6335 0.66 0.786617
Target:  5'- cGG-GCACACCcacgacggGGUGCCGuACGuGCg -3'
miRNA:   3'- aCCaCGUGUGGuag-----UCACGGC-UGU-CG- -5'
23507 5' -55.1 NC_005259.1 + 7432 0.67 0.725399
Target:  5'- cGGUGCccGCGCCGcauggCAGcGCCGAggaUGGCu -3'
miRNA:   3'- aCCACG--UGUGGUa----GUCaCGGCU---GUCG- -5'
23507 5' -55.1 NC_005259.1 + 8294 0.7 0.545802
Target:  5'- cGG-GCACccgcacggaaacgccGCCuuGUCGGagcUGCCGACGGCg -3'
miRNA:   3'- aCCaCGUG---------------UGG--UAGUC---ACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 8502 0.78 0.175512
Target:  5'- aUGGUGUGCACCAgacgCAGcgaGCaCGACAGCc -3'
miRNA:   3'- -ACCACGUGUGGUa---GUCa--CG-GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 8950 0.67 0.700926
Target:  5'- gUGG-GCGCGCCGUgGacgggcaccGUGCCGggacguaggugccaGCGGCg -3'
miRNA:   3'- -ACCaCGUGUGGUAgU---------CACGGC--------------UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 9416 0.66 0.766728
Target:  5'- gGGUGCgccACACCGU---UGUCGAgCAGCc -3'
miRNA:   3'- aCCACG---UGUGGUAgucACGGCU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 11042 0.72 0.393124
Target:  5'- gGGUGguCACCG-CAugacGUGCCGAuCGGCu -3'
miRNA:   3'- aCCACguGUGGUaGU----CACGGCU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 11743 0.67 0.71481
Target:  5'- aUGGUGCGCAgacggUCAUaGGUGaucaccgacUCGACGGCg -3'
miRNA:   3'- -ACCACGUGU-----GGUAgUCAC---------GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 12319 0.68 0.617189
Target:  5'- cGGUGCGCACC------GCCGcCAGCu -3'
miRNA:   3'- aCCACGUGUGGuagucaCGGCuGUCG- -5'
23507 5' -55.1 NC_005259.1 + 13095 0.66 0.756572
Target:  5'- cGGUGC-CACCGacccCGGcccGCuCGGCGGCu -3'
miRNA:   3'- aCCACGuGUGGUa---GUCa--CG-GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 14520 0.66 0.734852
Target:  5'- cGGcgaGCACGCgGugcguuUCGGUGCCGAguucgucCGGCa -3'
miRNA:   3'- aCCa--CGUGUGgU------AGUCACGGCU-------GUCG- -5'
23507 5' -55.1 NC_005259.1 + 15139 0.69 0.606275
Target:  5'- aGGUGUACgggGCCAccUCGGUGgCCGA-GGCc -3'
miRNA:   3'- aCCACGUG---UGGU--AGUCAC-GGCUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.