miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 68789 0.68 0.617189
Target:  5'- aGGUcGUACGCCGgggCGGUGUCGGugccCGGUa -3'
miRNA:   3'- aCCA-CGUGUGGUa--GUCACGGCU----GUCG- -5'
23507 5' -55.1 NC_005259.1 + 67403 0.7 0.510018
Target:  5'- gGGUGUcacgggccgACACCAUCggGGUGCCG--GGCu -3'
miRNA:   3'- aCCACG---------UGUGGUAG--UCACGGCugUCG- -5'
23507 5' -55.1 NC_005259.1 + 66008 0.76 0.253642
Target:  5'- gUGGUGCGCACCcUCGGgGCCGcACGuguuGCg -3'
miRNA:   3'- -ACCACGUGUGGuAGUCaCGGC-UGU----CG- -5'
23507 5' -55.1 NC_005259.1 + 65116 0.72 0.420734
Target:  5'- -aGUGCGuCACCGUCGGcgcaCCGGCGGCc -3'
miRNA:   3'- acCACGU-GUGGUAGUCac--GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 64588 0.74 0.333453
Target:  5'- cGGgccaGCACACCAacgaGGUGaCUGACGGCg -3'
miRNA:   3'- aCCa---CGUGUGGUag--UCAC-GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 61171 0.69 0.584522
Target:  5'- cGGUGUACGCC-UCGGUauggcccucGCCGGuCuGCu -3'
miRNA:   3'- aCCACGUGUGGuAGUCA---------CGGCU-GuCG- -5'
23507 5' -55.1 NC_005259.1 + 60558 0.7 0.520448
Target:  5'- ---gGCAUGCC--CGGUGCCGACGGUc -3'
miRNA:   3'- accaCGUGUGGuaGUCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 60509 0.66 0.786617
Target:  5'- cGGUGUugucguaguGCGCCAUggcCGG-GCCGggacGCAGCc -3'
miRNA:   3'- aCCACG---------UGUGGUA---GUCaCGGC----UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 60258 0.68 0.64997
Target:  5'- gGGUGCAaggcugGCCAcCAGcgcUGCCgGGCGGCc -3'
miRNA:   3'- aCCACGUg-----UGGUaGUC---ACGG-CUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 59288 0.71 0.46924
Target:  5'- cGGUGUgcagaccuACGCUGUC-GUGgCGGCAGCg -3'
miRNA:   3'- aCCACG--------UGUGGUAGuCACgGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 58393 0.76 0.240937
Target:  5'- cGGUGCGCACCAgcca--CCGGCGGCg -3'
miRNA:   3'- aCCACGUGUGGUagucacGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 57866 0.73 0.384185
Target:  5'- cGGUGCgACACCcucgauguggCGGUGCgCGACAGa -3'
miRNA:   3'- aCCACG-UGUGGua--------GUCACG-GCUGUCg -5'
23507 5' -55.1 NC_005259.1 + 57453 0.68 0.67176
Target:  5'- uUGGUGCgACGCUgcggCAG-GCCGGUGGCa -3'
miRNA:   3'- -ACCACG-UGUGGua--GUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 57287 0.67 0.693402
Target:  5'- cGGUG-GCACCucgUAGUGCaCGACAucgaGCa -3'
miRNA:   3'- aCCACgUGUGGua-GUCACG-GCUGU----CG- -5'
23507 5' -55.1 NC_005259.1 + 56221 0.66 0.776746
Target:  5'- cGGUGUAUGCCAgucgUCGccGCCGACcacguugggaucGGCg -3'
miRNA:   3'- aCCACGUGUGGU----AGUcaCGGCUG------------UCG- -5'
23507 5' -55.1 NC_005259.1 + 56156 0.7 0.498649
Target:  5'- cGGUcgagcacguccucGUugGCCA-CGGUGCCGACAuacGCg -3'
miRNA:   3'- aCCA-------------CGugUGGUaGUCACGGCUGU---CG- -5'
23507 5' -55.1 NC_005259.1 + 53733 0.66 0.766728
Target:  5'- aUGGUGauguCGCCGgguguccacUCGGUGCCGccgaACAGg -3'
miRNA:   3'- -ACCACgu--GUGGU---------AGUCACGGC----UGUCg -5'
23507 5' -55.1 NC_005259.1 + 52756 0.76 0.260198
Target:  5'- --cUGCACAacaucgagcUCGUCGGUGUCGGCAGCg -3'
miRNA:   3'- accACGUGU---------GGUAGUCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 52011 0.66 0.746292
Target:  5'- cGGaUGCACGagCGUCAGgccGCCGcACuGCg -3'
miRNA:   3'- aCC-ACGUGUg-GUAGUCa--CGGC-UGuCG- -5'
23507 5' -55.1 NC_005259.1 + 50668 0.77 0.211492
Target:  5'- aGG-GCACcaGCgCGUCGGUGCCGACgaGGCg -3'
miRNA:   3'- aCCaCGUG--UG-GUAGUCACGGCUG--UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.