Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23507 | 5' | -55.1 | NC_005259.1 | + | 58393 | 0.76 | 0.240937 |
Target: 5'- cGGUGCGCACCAgcca--CCGGCGGCg -3' miRNA: 3'- aCCACGUGUGGUagucacGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 50668 | 0.77 | 0.211492 |
Target: 5'- aGG-GCACcaGCgCGUCGGUGCCGACgaGGCg -3' miRNA: 3'- aCCaCGUG--UG-GUAGUCACGGCUG--UCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 4671 | 0.78 | 0.195351 |
Target: 5'- cGGUGUcuGCACUGgcUCGG-GCCGACAGCu -3' miRNA: 3'- aCCACG--UGUGGU--AGUCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 3741 | 0.78 | 0.190214 |
Target: 5'- cGGUcGCACgACCuAUCAG-GUCGACAGCg -3' miRNA: 3'- aCCA-CGUG-UGG-UAGUCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 8502 | 0.78 | 0.175512 |
Target: 5'- aUGGUGUGCACCAgacgCAGcgaGCaCGACAGCc -3' miRNA: 3'- -ACCACGUGUGGUa---GUCa--CG-GCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 11042 | 0.72 | 0.393124 |
Target: 5'- gGGUGguCACCG-CAugacGUGCCGAuCGGCu -3' miRNA: 3'- aCCACguGUGGUaGU----CACGGCU-GUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 742 | 0.72 | 0.402196 |
Target: 5'- cGGUGCcuACGCCGcCGGUGCCuACcGCg -3' miRNA: 3'- aCCACG--UGUGGUaGUCACGGcUGuCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 17333 | 0.69 | 0.5737 |
Target: 5'- gGGUGUGCcggucaacgucGCCGUCgAG-GUCGGCGGCu -3' miRNA: 3'- aCCACGUG-----------UGGUAG-UCaCGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 16490 | 0.69 | 0.562925 |
Target: 5'- aGG-GCGCACCcgCGcgcaugGCCGAgAGCg -3' miRNA: 3'- aCCaCGUGUGGuaGUca----CGGCUgUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 8294 | 0.7 | 0.545802 |
Target: 5'- cGG-GCACccgcacggaaacgccGCCuuGUCGGagcUGCCGACGGCg -3' miRNA: 3'- aCCaCGUG---------------UGG--UAGUC---ACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 60558 | 0.7 | 0.520448 |
Target: 5'- ---gGCAUGCC--CGGUGCCGACGGUc -3' miRNA: 3'- accaCGUGUGGuaGUCACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 23470 | 0.7 | 0.510018 |
Target: 5'- cGGgGCcucgGCAUUGUCGGUGCCGAC-GCc -3' miRNA: 3'- aCCaCG----UGUGGUAGUCACGGCUGuCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 67403 | 0.7 | 0.510018 |
Target: 5'- gGGUGUcacgggccgACACCAUCggGGUGCCG--GGCu -3' miRNA: 3'- aCCACG---------UGUGGUAG--UCACGGCugUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 34161 | 0.7 | 0.499678 |
Target: 5'- gUGGUGC-C-CCAcCAGUGCCGgaacacaccggGCAGUg -3' miRNA: 3'- -ACCACGuGuGGUaGUCACGGC-----------UGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 56156 | 0.7 | 0.498649 |
Target: 5'- cGGUcgagcacguccucGUugGCCA-CGGUGCCGACAuacGCg -3' miRNA: 3'- aCCA-------------CGugUGGUaGUCACGGCUGU---CG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 19470 | 0.71 | 0.478274 |
Target: 5'- -cGUGCGCAuCCGUCAGUucgucaacgaucuGCCGACAc- -3' miRNA: 3'- acCACGUGU-GGUAGUCA-------------CGGCUGUcg -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 18315 | 0.71 | 0.473244 |
Target: 5'- cGGUGUgcgACACCGaggcCGGUgcguucguggucgacGCCGACGGCg -3' miRNA: 3'- aCCACG---UGUGGUa---GUCA---------------CGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 59288 | 0.71 | 0.46924 |
Target: 5'- cGGUGUgcagaccuACGCUGUC-GUGgCGGCAGCg -3' miRNA: 3'- aCCACG--------UGUGGUAGuCACgGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 36899 | 0.72 | 0.436891 |
Target: 5'- cGGUGaGCGCCccacugacggggauAUC-GUGCCGACGGUg -3' miRNA: 3'- aCCACgUGUGG--------------UAGuCACGGCUGUCG- -5' |
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23507 | 5' | -55.1 | NC_005259.1 | + | 65116 | 0.72 | 0.420734 |
Target: 5'- -aGUGCGuCACCGUCGGcgcaCCGGCGGCc -3' miRNA: 3'- acCACGU-GUGGUAGUCac--GGCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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