miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 2018 0.8 0.129933
Target:  5'- gGGUgGCGCACCGgcaccUCAGUGCgGugGGCg -3'
miRNA:   3'- aCCA-CGUGUGGU-----AGUCACGgCugUCG- -5'
23507 5' -55.1 NC_005259.1 + 8502 0.78 0.175512
Target:  5'- aUGGUGUGCACCAgacgCAGcgaGCaCGACAGCc -3'
miRNA:   3'- -ACCACGUGUGGUa---GUCa--CG-GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 3741 0.78 0.190214
Target:  5'- cGGUcGCACgACCuAUCAG-GUCGACAGCg -3'
miRNA:   3'- aCCA-CGUG-UGG-UAGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 4671 0.78 0.195351
Target:  5'- cGGUGUcuGCACUGgcUCGG-GCCGACAGCu -3'
miRNA:   3'- aCCACG--UGUGGU--AGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 50668 0.77 0.211492
Target:  5'- aGG-GCACcaGCgCGUCGGUGCCGACgaGGCg -3'
miRNA:   3'- aCCaCGUG--UG-GUAGUCACGGCUG--UCG- -5'
23507 5' -55.1 NC_005259.1 + 58393 0.76 0.240937
Target:  5'- cGGUGCGCACCAgcca--CCGGCGGCg -3'
miRNA:   3'- aCCACGUGUGGUagucacGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 27371 0.76 0.253642
Target:  5'- uUGGUGCccgGCACgGUgaccggcggCGGUGUCGGCAGCg -3'
miRNA:   3'- -ACCACG---UGUGgUA---------GUCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 66008 0.76 0.253642
Target:  5'- gUGGUGCGCACCcUCGGgGCCGcACGuguuGCg -3'
miRNA:   3'- -ACCACGUGUGGuAGUCaCGGC-UGU----CG- -5'
23507 5' -55.1 NC_005259.1 + 52756 0.76 0.260198
Target:  5'- --cUGCACAacaucgagcUCGUCGGUGUCGGCAGCg -3'
miRNA:   3'- accACGUGU---------GGUAGUCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 34554 0.75 0.273723
Target:  5'- ---aGCuuGCCGUCGGgGCCGACGGCg -3'
miRNA:   3'- accaCGugUGGUAGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 64588 0.74 0.333453
Target:  5'- cGGgccaGCACACCAacgaGGUGaCUGACGGCg -3'
miRNA:   3'- aCCa---CGUGUGGUag--UCAC-GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 22794 0.74 0.341558
Target:  5'- aGGUGCuCACCGagGGUGCCGAUu-- -3'
miRNA:   3'- aCCACGuGUGGUagUCACGGCUGucg -5'
23507 5' -55.1 NC_005259.1 + 17065 0.73 0.37451
Target:  5'- cGGUGCGCGCauuugugCGUCAGgccGCCGAUauugGGCu -3'
miRNA:   3'- aCCACGUGUG-------GUAGUCa--CGGCUG----UCG- -5'
23507 5' -55.1 NC_005259.1 + 57866 0.73 0.384185
Target:  5'- cGGUGCgACACCcucgauguggCGGUGCgCGACAGa -3'
miRNA:   3'- aCCACG-UGUGGua--------GUCACG-GCUGUCg -5'
23507 5' -55.1 NC_005259.1 + 11042 0.72 0.393124
Target:  5'- gGGUGguCACCG-CAugacGUGCCGAuCGGCu -3'
miRNA:   3'- aCCACguGUGGUaGU----CACGGCU-GUCG- -5'
23507 5' -55.1 NC_005259.1 + 742 0.72 0.402196
Target:  5'- cGGUGCcuACGCCGcCGGUGCCuACcGCg -3'
miRNA:   3'- aCCACG--UGUGGUaGUCACGGcUGuCG- -5'
23507 5' -55.1 NC_005259.1 + 65116 0.72 0.420734
Target:  5'- -aGUGCGuCACCGUCGGcgcaCCGGCGGCc -3'
miRNA:   3'- acCACGU-GUGGUAGUCac--GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 36899 0.72 0.436891
Target:  5'- cGGUGaGCGCCccacugacggggauAUC-GUGCCGACGGUg -3'
miRNA:   3'- aCCACgUGUGG--------------UAGuCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 59288 0.71 0.46924
Target:  5'- cGGUGUgcagaccuACGCUGUC-GUGgCGGCAGCg -3'
miRNA:   3'- aCCACG--------UGUGGUAGuCACgGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 18315 0.71 0.473244
Target:  5'- cGGUGUgcgACACCGaggcCGGUgcguucguggucgacGCCGACGGCg -3'
miRNA:   3'- aCCACG---UGUGGUa---GUCA---------------CGGCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.