Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 43114 | 0.74 | 0.623804 |
Target: 5'- aGGUCUgGCaGCAGCGAcuuGAGCCCCu- -3' miRNA: 3'- cCUAGAgCG-CGUUGCUu--UUUGGGGcg -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 58175 | 0.75 | 0.601673 |
Target: 5'- gGGAUCUCGaCGC-ACGucuuGACCgCCGUg -3' miRNA: 3'- -CCUAGAGC-GCGuUGCuuu-UUGG-GGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 47784 | 0.75 | 0.567604 |
Target: 5'- uGGAaaUCGCGCAGCGGuccGAcggugagucgcgaGACCUCGCg -3' miRNA: 3'- -CCUagAGCGCGUUGCU---UU-------------UUGGGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 955 | 0.76 | 0.54696 |
Target: 5'- cGGGcagCUCGCGCAACGGcucaacggcgacGAGACaCCgGCa -3' miRNA: 3'- -CCUa--GAGCGCGUUGCU------------UUUUG-GGgCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 63826 | 0.78 | 0.433598 |
Target: 5'- cGAUCUCGCGCAGCGuuucGAGGCaagCGCg -3' miRNA: 3'- cCUAGAGCGCGUUGCu---UUUUGgg-GCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 36486 | 0.71 | 0.774745 |
Target: 5'- cGAUCUCGCGguCGACGGGcAGCUCUGg -3' miRNA: 3'- cCUAGAGCGC--GUUGCUUuUUGGGGCg -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 51515 | 0.71 | 0.774745 |
Target: 5'- cGAUCUCGaCGC-GCGu--GACCUCGUg -3' miRNA: 3'- cCUAGAGC-GCGuUGCuuuUUGGGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 51430 | 0.69 | 0.874581 |
Target: 5'- aGGUCUUGgGCGggccACGG--GGCCUCGCg -3' miRNA: 3'- cCUAGAGCgCGU----UGCUuuUUGGGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 21436 | 0.69 | 0.874581 |
Target: 5'- aGAUCggCGUGCAcAUGGAGAACgCUGCc -3' miRNA: 3'- cCUAGa-GCGCGU-UGCUUUUUGgGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 49991 | 0.69 | 0.866611 |
Target: 5'- cGGAUCgCGUGCgGACGGcu-GCCCuCGUg -3' miRNA: 3'- -CCUAGaGCGCG-UUGCUuuuUGGG-GCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 61756 | 0.69 | 0.866611 |
Target: 5'- aGAUCU-GUGCGGCGgcAAucACCgCCGCa -3' miRNA: 3'- cCUAGAgCGCGUUGCuuUU--UGG-GGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 54355 | 0.7 | 0.849937 |
Target: 5'- aGGG--UCGgGCAACGGAuuGCgCUCGCg -3' miRNA: 3'- -CCUagAGCgCGUUGCUUuuUG-GGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 3866 | 0.7 | 0.841249 |
Target: 5'- cGGUCgaGCGCcuCGAGcccACCCCGCa -3' miRNA: 3'- cCUAGagCGCGuuGCUUuu-UGGGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 35787 | 0.7 | 0.840368 |
Target: 5'- gGGAUgUCGaCGCcgcgccucaacagGACGGugccguacGACCCCGCa -3' miRNA: 3'- -CCUAgAGC-GCG-------------UUGCUuu------UUGGGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 24071 | 0.71 | 0.813885 |
Target: 5'- -aAUCUCGUGCAccGCGAGAucaCCgGCa -3' miRNA: 3'- ccUAGAGCGCGU--UGCUUUuugGGgCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 19862 | 0.71 | 0.813885 |
Target: 5'- uGGcgCUCGCGCccgcCGGGAucgccGACgCCGCg -3' miRNA: 3'- -CCuaGAGCGCGuu--GCUUU-----UUGgGGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 22942 | 0.71 | 0.804363 |
Target: 5'- cGGGUCaUCGCGcCGAUGAAAcucgucAACCUcaCGCa -3' miRNA: 3'- -CCUAG-AGCGC-GUUGCUUU------UUGGG--GCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 61935 | 0.71 | 0.794658 |
Target: 5'- cGGucUCUCGCGCGGgugcCGG--GGCCaCCGCa -3' miRNA: 3'- -CCu-AGAGCGCGUU----GCUuuUUGG-GGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 63984 | 0.71 | 0.794658 |
Target: 5'- uGGAUuugauuucCUCGCGCGugACGGcauACCaCCGCg -3' miRNA: 3'- -CCUA--------GAGCGCGU--UGCUuuuUGG-GGCG- -5' |
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23509 | 3' | -50.3 | NC_005259.1 | + | 40819 | 0.71 | 0.784782 |
Target: 5'- gGGGUCgaCGCGC-ACGAugGGCCgCGUg -3' miRNA: 3'- -CCUAGa-GCGCGuUGCUuuUUGGgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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