miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23509 3' -50.3 NC_005259.1 + 35787 0.7 0.840368
Target:  5'- gGGAUgUCGaCGCcgcgccucaacagGACGGugccguacGACCCCGCa -3'
miRNA:   3'- -CCUAgAGC-GCG-------------UUGCUuu------UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 36323 0.67 0.944519
Target:  5'- gGGAUCaUGUugGCaAACGAA-AugCCCGCg -3'
miRNA:   3'- -CCUAGaGCG--CG-UUGCUUuUugGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 36486 0.71 0.774745
Target:  5'- cGAUCUCGCGguCGACGGGcAGCUCUGg -3'
miRNA:   3'- cCUAGAGCGC--GUUGCUUuUUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 38153 0.66 0.965327
Target:  5'- cGGuugCUCGCGCcgauGACGGugaucgguGCCUCGUc -3'
miRNA:   3'- -CCua-GAGCGCG----UUGCUuuu-----UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 39270 0.66 0.957795
Target:  5'- cGGca-UCGUGCcgaucuUGAAGcACCCCGCg -3'
miRNA:   3'- -CCuagAGCGCGuu----GCUUUuUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 40340 0.72 0.754233
Target:  5'- cGGAcacCUCGCGCcuCGAugauGAACCgCGCc -3'
miRNA:   3'- -CCUa--GAGCGCGuuGCUu---UUUGGgGCG- -5'
23509 3' -50.3 NC_005259.1 + 40819 0.71 0.784782
Target:  5'- gGGGUCgaCGCGC-ACGAugGGCCgCGUg -3'
miRNA:   3'- -CCUAGa-GCGCGuUGCUuuUUGGgGCG- -5'
23509 3' -50.3 NC_005259.1 + 41670 0.67 0.934299
Target:  5'- gGGAUCUgcacCGCGU-GCGu--GGCCaCCGCg -3'
miRNA:   3'- -CCUAGA----GCGCGuUGCuuuUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 43114 0.74 0.623804
Target:  5'- aGGUCUgGCaGCAGCGAcuuGAGCCCCu- -3'
miRNA:   3'- cCUAGAgCG-CGUUGCUu--UUUGGGGcg -5'
23509 3' -50.3 NC_005259.1 + 43193 0.68 0.928771
Target:  5'- cGAcCUCG-GCGGCGAugucGACgCCCGCc -3'
miRNA:   3'- cCUaGAGCgCGUUGCUuu--UUG-GGGCG- -5'
23509 3' -50.3 NC_005259.1 + 46270 0.66 0.957795
Target:  5'- aGGGUCUgCGCGagguucugcaaCAGCGG--GGCCgCCGUg -3'
miRNA:   3'- -CCUAGA-GCGC-----------GUUGCUuuUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 47367 0.66 0.972161
Target:  5'- aGGAUCguguugccgaacgcaCGCGCGcCGuuGAGACCCuCGUc -3'
miRNA:   3'- -CCUAGa--------------GCGCGUuGCu-UUUUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 47784 0.75 0.567604
Target:  5'- uGGAaaUCGCGCAGCGGuccGAcggugagucgcgaGACCUCGCg -3'
miRNA:   3'- -CCUagAGCGCGUUGCU---UU-------------UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 49357 0.67 0.939548
Target:  5'- aGGUgC-CGCGCGAUGAAGAGgCCgGUg -3'
miRNA:   3'- cCUA-GaGCGCGUUGCUUUUUgGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 49991 0.69 0.866611
Target:  5'- cGGAUCgCGUGCgGACGGcu-GCCCuCGUg -3'
miRNA:   3'- -CCUAGaGCGCG-UUGCUuuuUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 50154 0.72 0.733216
Target:  5'- cGAUCcggCGCGUgAGCGAgcggugGAAugCCCGCa -3'
miRNA:   3'- cCUAGa--GCGCG-UUGCU------UUUugGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 50461 0.69 0.882296
Target:  5'- cGGUCUCGCuGaucACGuugacGAAACCCUGCu -3'
miRNA:   3'- cCUAGAGCG-Cgu-UGCu----UUUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 51430 0.69 0.874581
Target:  5'- aGGUCUUGgGCGggccACGG--GGCCUCGCg -3'
miRNA:   3'- cCUAGAGCgCGU----UGCUuuUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 51515 0.71 0.774745
Target:  5'- cGAUCUCGaCGC-GCGu--GACCUCGUg -3'
miRNA:   3'- cCUAGAGC-GCGuUGCuuuUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 52001 0.68 0.916873
Target:  5'- cGAUCUCGaccggauGCAcgaGCGucAGGCCgCCGCa -3'
miRNA:   3'- cCUAGAGCg------CGU---UGCuuUUUGG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.