miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23509 3' -50.3 NC_005259.1 + 17739 0.68 0.928771
Target:  5'- uGGcugCUCGaCGCGAucCGuGAGGCCgCCGCg -3'
miRNA:   3'- -CCua-GAGC-GCGUU--GCuUUUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 18171 0.68 0.916873
Target:  5'- cGGAUCUgGCaGU--CGAGGucGACCCCGa -3'
miRNA:   3'- -CCUAGAgCG-CGuuGCUUU--UUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 18846 0.66 0.957795
Target:  5'- aGGGUCUCGCcggugccguGCAACGGuu-GCgCgCGUg -3'
miRNA:   3'- -CCUAGAGCG---------CGUUGCUuuuUG-GgGCG- -5'
23509 3' -50.3 NC_005259.1 + 19862 0.71 0.813885
Target:  5'- uGGcgCUCGCGCccgcCGGGAucgccGACgCCGCg -3'
miRNA:   3'- -CCuaGAGCGCGuu--GCUUU-----UUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 20222 0.68 0.910505
Target:  5'- uGGAUCUUGUGgGGauc-GAACaCCCGCa -3'
miRNA:   3'- -CCUAGAGCGCgUUgcuuUUUG-GGGCG- -5'
23509 3' -50.3 NC_005259.1 + 20686 0.66 0.97186
Target:  5'- uGGUCgcacggcaCGCGCucggugguCGAAGGuuucACCCCGCc -3'
miRNA:   3'- cCUAGa-------GCGCGuu------GCUUUU----UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 21436 0.69 0.874581
Target:  5'- aGAUCggCGUGCAcAUGGAGAACgCUGCc -3'
miRNA:   3'- cCUAGa-GCGCGU-UGCUUUUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 22942 0.71 0.804363
Target:  5'- cGGGUCaUCGCGcCGAUGAAAcucgucAACCUcaCGCa -3'
miRNA:   3'- -CCUAG-AGCGC-GUUGCUUU------UUGGG--GCG- -5'
23509 3' -50.3 NC_005259.1 + 23525 0.66 0.957795
Target:  5'- aGAUCUCGa-CggUGAAAAucaGCCgCCGCc -3'
miRNA:   3'- cCUAGAGCgcGuuGCUUUU---UGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 24071 0.71 0.813885
Target:  5'- -aAUCUCGUGCAccGCGAGAucaCCgGCa -3'
miRNA:   3'- ccUAGAGCGCGU--UGCUUUuugGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 24688 0.66 0.97186
Target:  5'- ---cCUCGUGCAcgugccgaGCGAuc-ACCCCGa -3'
miRNA:   3'- ccuaGAGCGCGU--------UGCUuuuUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 25493 0.66 0.968714
Target:  5'- aGGcgCUCGCGCGugaGGgcaaaAAGGCCCuCGa -3'
miRNA:   3'- -CCuaGAGCGCGUug-CU-----UUUUGGG-GCg -5'
23509 3' -50.3 NC_005259.1 + 27768 0.66 0.97186
Target:  5'- ---cCUCG-GCGACGAccuuGAGcACCUCGCg -3'
miRNA:   3'- ccuaGAGCgCGUUGCU----UUU-UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 28902 0.73 0.711789
Target:  5'- aGAUUgUCG-GCGACGAGGAACgCCGCc -3'
miRNA:   3'- cCUAG-AGCgCGUUGCUUUUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 29953 0.66 0.970001
Target:  5'- cGGucgcggCUgGUGgGGCGGGcggugaccguccaacGGACCCCGCa -3'
miRNA:   3'- -CCua----GAgCGCgUUGCUU---------------UUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 30504 0.68 0.910505
Target:  5'- aGAcCUUGCGCGAUGuguuGAGcucuuuagcGCCCUGCa -3'
miRNA:   3'- cCUaGAGCGCGUUGCu---UUU---------UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 31298 0.68 0.928771
Target:  5'- cGGUCU-GCGCAACGAGcuuGCCgagaCCGUu -3'
miRNA:   3'- cCUAGAgCGCGUUGCUUuu-UGG----GGCG- -5'
23509 3' -50.3 NC_005259.1 + 31845 0.67 0.954067
Target:  5'- --uUCUCGCGCGugaccgcgucauugGCGAucuugucggucguGACCUCGCc -3'
miRNA:   3'- ccuAGAGCGCGU--------------UGCUuu-----------UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 33385 0.67 0.953639
Target:  5'- cGGUCcgccgaGCGCGACGAGccguguCCaCCGCg -3'
miRNA:   3'- cCUAGag----CGCGUUGCUUuuu---GG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 33732 0.69 0.889752
Target:  5'- uGAUgUCGCGUGgagcggugugcACGAGcacGAACaCCCGCa -3'
miRNA:   3'- cCUAgAGCGCGU-----------UGCUU---UUUG-GGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.