miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23509 3' -50.3 NC_005259.1 + 955 0.76 0.54696
Target:  5'- cGGGcagCUCGCGCAACGGcucaacggcgacGAGACaCCgGCa -3'
miRNA:   3'- -CCUa--GAGCGCGUUGCU------------UUUUG-GGgCG- -5'
23509 3' -50.3 NC_005259.1 + 1364 0.66 0.968714
Target:  5'- uGGGccgCUCGcCGCGccgcccGCGAG--GCCCgCGCa -3'
miRNA:   3'- -CCUa--GAGC-GCGU------UGCUUuuUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 1682 0.68 0.922962
Target:  5'- cGAUCUgCGCGCccgcaagcGCGAAcucAAGCgCCGCc -3'
miRNA:   3'- cCUAGA-GCGCGu-------UGCUU---UUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 2312 0.68 0.901813
Target:  5'- cGGcauUCUgGUaCAGCGAcugguaaccgcgcaGAAACCCCGCc -3'
miRNA:   3'- -CCu--AGAgCGcGUUGCU--------------UUUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 3866 0.7 0.841249
Target:  5'- cGGUCgaGCGCcuCGAGcccACCCCGCa -3'
miRNA:   3'- cCUAGagCGCGuuGCUUuu-UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 4338 0.68 0.928771
Target:  5'- cGGAcCUCGuCGCggUGAuGAGCgCCGg -3'
miRNA:   3'- -CCUaGAGC-GCGuuGCUuUUUGgGGCg -5'
23509 3' -50.3 NC_005259.1 + 4714 0.69 0.896941
Target:  5'- cGAUgacCGCGCc-CGAGAAAgCCCGCa -3'
miRNA:   3'- cCUAga-GCGCGuuGCUUUUUgGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 5660 0.72 0.733216
Target:  5'- gGGcgCUacaCGCGCGACaacaucGCCCCGCa -3'
miRNA:   3'- -CCuaGA---GCGCGUUGcuuuu-UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 6194 0.67 0.934299
Target:  5'- uGAUCUgagcaGCGUgAGCGGGguGAGCCgCCGCg -3'
miRNA:   3'- cCUAGAg----CGCG-UUGCUU--UUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 7220 0.68 0.922962
Target:  5'- uGGAUCU-GCGUGAUGAAcGACggcagCCGCg -3'
miRNA:   3'- -CCUAGAgCGCGUUGCUUuUUGg----GGCG- -5'
23509 3' -50.3 NC_005259.1 + 7746 0.67 0.93267
Target:  5'- aGGA---CGCGgucaccgucugagaCAACaGAGAAACCCCGCc -3'
miRNA:   3'- -CCUagaGCGC--------------GUUG-CUUUUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 9894 0.72 0.733216
Target:  5'- --cUCgCGCGCGACGAGcuuucGGCCCuCGCg -3'
miRNA:   3'- ccuAGaGCGCGUUGCUUu----UUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 10018 0.66 0.964262
Target:  5'- cGAUCUCGCcCuuacCGAccacgaccucgaauGAGACCCCGa -3'
miRNA:   3'- cCUAGAGCGcGuu--GCU--------------UUUUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 10081 0.66 0.965327
Target:  5'- aGGA---CGC-CGACGAGuAGACCCCGa -3'
miRNA:   3'- -CCUagaGCGcGUUGCUU-UUUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 11948 0.69 0.882296
Target:  5'- ---gUUCGCGCAgcccgGCGAGcacgucGAACCCgGCg -3'
miRNA:   3'- ccuaGAGCGCGU-----UGCUU------UUUGGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 12940 0.66 0.965327
Target:  5'- cGGAccccggCU-GCGCGACcccgcaucGACCCCGCg -3'
miRNA:   3'- -CCUa-----GAgCGCGUUGcuuu----UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 13879 0.66 0.965327
Target:  5'- gGGAUCaCGUgGUGACccGAGACCCCGa -3'
miRNA:   3'- -CCUAGaGCG-CGUUGcuUUUUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 14168 0.69 0.889752
Target:  5'- uGGAUCUCGCcgGGCGGGugGCaaCCGCu -3'
miRNA:   3'- -CCUAGAGCGcgUUGCUUuuUGg-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 15919 0.66 0.957795
Target:  5'- aGAUgUUCGCuGCGAUGAAAcGCUCgGCg -3'
miRNA:   3'- cCUA-GAGCG-CGUUGCUUUuUGGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 16541 0.67 0.939548
Target:  5'- aGGGUg-CGCccgaGCGACcAGAGAUCCCGCc -3'
miRNA:   3'- -CCUAgaGCG----CGUUGcUUUUUGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.