miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23509 3' -50.3 NC_005259.1 + 68303 0.67 0.939548
Target:  5'- gGGAUCgggCGCGUccGGCGAcGGGAUCUCGa -3'
miRNA:   3'- -CCUAGa--GCGCG--UUGCU-UUUUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 68120 0.68 0.916873
Target:  5'- cGGGUCgagaGCAGCGgcGAGCUCgGCa -3'
miRNA:   3'- -CCUAGagcgCGUUGCuuUUUGGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 67958 0.73 0.668072
Target:  5'- cGGGUUgugcuguagcgCGCGCAGCGGcguGGCCaCCGCc -3'
miRNA:   3'- -CCUAGa----------GCGCGUUGCUuu-UUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 67908 0.66 0.97186
Target:  5'- uGGGUCUCggcgaggucaaGCGCGuaggucGCGAGGauGAUCuuGCg -3'
miRNA:   3'- -CCUAGAG-----------CGCGU------UGCUUU--UUGGggCG- -5'
23509 3' -50.3 NC_005259.1 + 66708 0.74 0.645963
Target:  5'- uGGUgUCGUGC-ACGAuGAugCCCGCc -3'
miRNA:   3'- cCUAgAGCGCGuUGCUuUUugGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 64826 0.67 0.953639
Target:  5'- uGAg--CGUGUggUGAcgGACCCUGCu -3'
miRNA:   3'- cCUagaGCGCGuuGCUuuUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 63984 0.71 0.794658
Target:  5'- uGGAUuugauuucCUCGCGCGugACGGcauACCaCCGCg -3'
miRNA:   3'- -CCUA--------GAGCGCGU--UGCUuuuUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 63938 0.69 0.877698
Target:  5'- uGGGUCUuacCGUccgGCAGCGAGAucucggcggucucCCCCGCc -3'
miRNA:   3'- -CCUAGA---GCG---CGUUGCUUUuu-----------GGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 63826 0.78 0.433598
Target:  5'- cGAUCUCGCGCAGCGuuucGAGGCaagCGCg -3'
miRNA:   3'- cCUAGAGCGCGUUGCu---UUUUGgg-GCG- -5'
23509 3' -50.3 NC_005259.1 + 63696 0.67 0.953639
Target:  5'- gGGAUCUgCGCcugccCAGCGggGAucggGgCCUGCg -3'
miRNA:   3'- -CCUAGA-GCGc----GUUGCuuUU----UgGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 62775 0.69 0.882296
Target:  5'- cGGAaCgUCGCGCAGCuuGGucuuGAGCgCCGCg -3'
miRNA:   3'- -CCUaG-AGCGCGUUG--CUu---UUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 61935 0.71 0.794658
Target:  5'- cGGucUCUCGCGCGGgugcCGG--GGCCaCCGCa -3'
miRNA:   3'- -CCu-AGAGCGCGUU----GCUuuUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 61756 0.69 0.866611
Target:  5'- aGAUCU-GUGCGGCGgcAAucACCgCCGCa -3'
miRNA:   3'- cCUAGAgCGCGUUGCuuUU--UGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 59395 0.68 0.910505
Target:  5'- --cUC-CGCGC-GCGAGcguGACCUCGCg -3'
miRNA:   3'- ccuAGaGCGCGuUGCUUu--UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 58815 0.67 0.939548
Target:  5'- cGGG-CUCGCGCuGCucGGcACCCuCGCc -3'
miRNA:   3'- -CCUaGAGCGCGuUGcuUUuUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 58481 0.67 0.949215
Target:  5'- uGGcUgUCGC-CGACGAcaucGACCUCGCg -3'
miRNA:   3'- -CCuAgAGCGcGUUGCUuu--UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 58326 0.79 0.38674
Target:  5'- uGAUCUCGgGCAGCGAGAucaggucgguGGCCUCGg -3'
miRNA:   3'- cCUAGAGCgCGUUGCUUU----------UUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 58175 0.75 0.601673
Target:  5'- gGGAUCUCGaCGC-ACGucuuGACCgCCGUg -3'
miRNA:   3'- -CCUAGAGC-GCGuUGCuuu-UUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 58043 0.66 0.963902
Target:  5'- cGGAaguguUCUUGCGuCAGCGAAcgcaugaaccauucGAccagcucgggccaGCCCUGCu -3'
miRNA:   3'- -CCU-----AGAGCGC-GUUGCUU--------------UU-------------UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 57880 0.72 0.733216
Target:  5'- cGAUgUgGCGguGCGcGAcaGACCCCGCu -3'
miRNA:   3'- cCUAgAgCGCguUGCuUU--UUGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.