miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23509 3' -50.3 NC_005259.1 + 58326 0.79 0.38674
Target:  5'- uGAUCUCGgGCAGCGAGAucaggucgguGGCCUCGg -3'
miRNA:   3'- cCUAGAGCgCGUUGCUUU----------UUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 63826 0.78 0.433598
Target:  5'- cGAUCUCGCGCAGCGuuucGAGGCaagCGCg -3'
miRNA:   3'- cCUAGAGCGCGUUGCu---UUUUGgg-GCG- -5'
23509 3' -50.3 NC_005259.1 + 955 0.76 0.54696
Target:  5'- cGGGcagCUCGCGCAACGGcucaacggcgacGAGACaCCgGCa -3'
miRNA:   3'- -CCUa--GAGCGCGUUGCU------------UUUUG-GGgCG- -5'
23509 3' -50.3 NC_005259.1 + 47784 0.75 0.567604
Target:  5'- uGGAaaUCGCGCAGCGGuccGAcggugagucgcgaGACCUCGCg -3'
miRNA:   3'- -CCUagAGCGCGUUGCU---UU-------------UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 58175 0.75 0.601673
Target:  5'- gGGAUCUCGaCGC-ACGucuuGACCgCCGUg -3'
miRNA:   3'- -CCUAGAGC-GCGuUGCuuu-UUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 43114 0.74 0.623804
Target:  5'- aGGUCUgGCaGCAGCGAcuuGAGCCCCu- -3'
miRNA:   3'- cCUAGAgCG-CGUUGCUu--UUUGGGGcg -5'
23509 3' -50.3 NC_005259.1 + 66708 0.74 0.645963
Target:  5'- uGGUgUCGUGC-ACGAuGAugCCCGCc -3'
miRNA:   3'- cCUAgAGCGCGuUGCUuUUugGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 67958 0.73 0.668072
Target:  5'- cGGGUUgugcuguagcgCGCGCAGCGGcguGGCCaCCGCc -3'
miRNA:   3'- -CCUAGa----------GCGCGUUGCUuu-UUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 28902 0.73 0.711789
Target:  5'- aGAUUgUCG-GCGACGAGGAACgCCGCc -3'
miRNA:   3'- cCUAG-AGCgCGUUGCUUUUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 57880 0.72 0.733216
Target:  5'- cGAUgUgGCGguGCGcGAcaGACCCCGCu -3'
miRNA:   3'- cCUAgAgCGCguUGCuUU--UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 50154 0.72 0.733216
Target:  5'- cGAUCcggCGCGUgAGCGAgcggugGAAugCCCGCa -3'
miRNA:   3'- cCUAGa--GCGCG-UUGCU------UUUugGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 5660 0.72 0.733216
Target:  5'- gGGcgCUacaCGCGCGACaacaucGCCCCGCa -3'
miRNA:   3'- -CCuaGA---GCGCGUUGcuuuu-UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 9894 0.72 0.733216
Target:  5'- --cUCgCGCGCGACGAGcuuucGGCCCuCGCg -3'
miRNA:   3'- ccuAGaGCGCGUUGCUUu----UUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 40340 0.72 0.754233
Target:  5'- cGGAcacCUCGCGCcuCGAugauGAACCgCGCc -3'
miRNA:   3'- -CCUa--GAGCGCGuuGCUu---UUUGGgGCG- -5'
23509 3' -50.3 NC_005259.1 + 36486 0.71 0.774745
Target:  5'- cGAUCUCGCGguCGACGGGcAGCUCUGg -3'
miRNA:   3'- cCUAGAGCGC--GUUGCUUuUUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 51515 0.71 0.774745
Target:  5'- cGAUCUCGaCGC-GCGu--GACCUCGUg -3'
miRNA:   3'- cCUAGAGC-GCGuUGCuuuUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 40819 0.71 0.784782
Target:  5'- gGGGUCgaCGCGC-ACGAugGGCCgCGUg -3'
miRNA:   3'- -CCUAGa-GCGCGuUGCUuuUUGGgGCG- -5'
23509 3' -50.3 NC_005259.1 + 63984 0.71 0.794658
Target:  5'- uGGAUuugauuucCUCGCGCGugACGGcauACCaCCGCg -3'
miRNA:   3'- -CCUA--------GAGCGCGU--UGCUuuuUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 61935 0.71 0.794658
Target:  5'- cGGucUCUCGCGCGGgugcCGG--GGCCaCCGCa -3'
miRNA:   3'- -CCu-AGAGCGCGUU----GCUuuUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 22942 0.71 0.804363
Target:  5'- cGGGUCaUCGCGcCGAUGAAAcucgucAACCUcaCGCa -3'
miRNA:   3'- -CCUAG-AGCGC-GUUGCUUU------UUGGG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.