miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23509 3' -50.3 NC_005259.1 + 24071 0.71 0.813885
Target:  5'- -aAUCUCGUGCAccGCGAGAucaCCgGCa -3'
miRNA:   3'- ccUAGAGCGCGU--UGCUUUuugGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 19862 0.71 0.813885
Target:  5'- uGGcgCUCGCGCccgcCGGGAucgccGACgCCGCg -3'
miRNA:   3'- -CCuaGAGCGCGuu--GCUUU-----UUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 35787 0.7 0.840368
Target:  5'- gGGAUgUCGaCGCcgcgccucaacagGACGGugccguacGACCCCGCa -3'
miRNA:   3'- -CCUAgAGC-GCG-------------UUGCUuu------UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 3866 0.7 0.841249
Target:  5'- cGGUCgaGCGCcuCGAGcccACCCCGCa -3'
miRNA:   3'- cCUAGagCGCGuuGCUUuu-UGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 54355 0.7 0.849937
Target:  5'- aGGG--UCGgGCAACGGAuuGCgCUCGCg -3'
miRNA:   3'- -CCUagAGCgCGUUGCUUuuUG-GGGCG- -5'
23509 3' -50.3 NC_005259.1 + 49991 0.69 0.866611
Target:  5'- cGGAUCgCGUGCgGACGGcu-GCCCuCGUg -3'
miRNA:   3'- -CCUAGaGCGCG-UUGCUuuuUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 61756 0.69 0.866611
Target:  5'- aGAUCU-GUGCGGCGgcAAucACCgCCGCa -3'
miRNA:   3'- cCUAGAgCGCGUUGCuuUU--UGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 21436 0.69 0.874581
Target:  5'- aGAUCggCGUGCAcAUGGAGAACgCUGCc -3'
miRNA:   3'- cCUAGa-GCGCGU-UGCUUUUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 51430 0.69 0.874581
Target:  5'- aGGUCUUGgGCGggccACGG--GGCCUCGCg -3'
miRNA:   3'- cCUAGAGCgCGU----UGCUuuUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 63938 0.69 0.877698
Target:  5'- uGGGUCUuacCGUccgGCAGCGAGAucucggcggucucCCCCGCc -3'
miRNA:   3'- -CCUAGA---GCG---CGUUGCUUUuu-----------GGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 62775 0.69 0.882296
Target:  5'- cGGAaCgUCGCGCAGCuuGGucuuGAGCgCCGCg -3'
miRNA:   3'- -CCUaG-AGCGCGUUG--CUu---UUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 50461 0.69 0.882296
Target:  5'- cGGUCUCGCuGaucACGuugacGAAACCCUGCu -3'
miRNA:   3'- cCUAGAGCG-Cgu-UGCu----UUUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 11948 0.69 0.882296
Target:  5'- ---gUUCGCGCAgcccgGCGAGcacgucGAACCCgGCg -3'
miRNA:   3'- ccuaGAGCGCGU-----UGCUU------UUUGGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 14168 0.69 0.889752
Target:  5'- uGGAUCUCGCcgGGCGGGugGCaaCCGCu -3'
miRNA:   3'- -CCUAGAGCGcgUUGCUUuuUGg-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 33732 0.69 0.889752
Target:  5'- uGAUgUCGCGUGgagcggugugcACGAGcacGAACaCCCGCa -3'
miRNA:   3'- cCUAgAGCGCGU-----------UGCUU---UUUG-GGGCG- -5'
23509 3' -50.3 NC_005259.1 + 4714 0.69 0.896941
Target:  5'- cGAUgacCGCGCc-CGAGAAAgCCCGCa -3'
miRNA:   3'- cCUAga-GCGCGuuGCUUUUUgGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 2312 0.68 0.901813
Target:  5'- cGGcauUCUgGUaCAGCGAcugguaaccgcgcaGAAACCCCGCc -3'
miRNA:   3'- -CCu--AGAgCGcGUUGCU--------------UUUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 20222 0.68 0.910505
Target:  5'- uGGAUCUUGUGgGGauc-GAACaCCCGCa -3'
miRNA:   3'- -CCUAGAGCGCgUUgcuuUUUG-GGGCG- -5'
23509 3' -50.3 NC_005259.1 + 59395 0.68 0.910505
Target:  5'- --cUC-CGCGC-GCGAGcguGACCUCGCg -3'
miRNA:   3'- ccuAGaGCGCGuUGCUUu--UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 30504 0.68 0.910505
Target:  5'- aGAcCUUGCGCGAUGuguuGAGcucuuuagcGCCCUGCa -3'
miRNA:   3'- cCUaGAGCGCGUUGCu---UUU---------UGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.