miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23509 3' -50.3 NC_005259.1 + 31845 0.67 0.954067
Target:  5'- --uUCUCGCGCGugaccgcgucauugGCGAucuugucggucguGACCUCGCc -3'
miRNA:   3'- ccuAGAGCGCGU--------------UGCUuu-----------UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 64826 0.67 0.953639
Target:  5'- uGAg--CGUGUggUGAcgGACCCUGCu -3'
miRNA:   3'- cCUagaGCGCGuuGCUuuUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 33385 0.67 0.953639
Target:  5'- cGGUCcgccgaGCGCGACGAGccguguCCaCCGCg -3'
miRNA:   3'- cCUAGag----CGCGUUGCUUuuu---GG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 63696 0.67 0.953639
Target:  5'- gGGAUCUgCGCcugccCAGCGggGAucggGgCCUGCg -3'
miRNA:   3'- -CCUAGA-GCGc----GUUGCuuUU----UgGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 58481 0.67 0.949215
Target:  5'- uGGcUgUCGC-CGACGAcaucGACCUCGCg -3'
miRNA:   3'- -CCuAgAGCGcGUUGCUuu--UUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 36323 0.67 0.944519
Target:  5'- gGGAUCaUGUugGCaAACGAA-AugCCCGCg -3'
miRNA:   3'- -CCUAGaGCG--CG-UUGCUUuUugGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 16541 0.67 0.939548
Target:  5'- aGGGUg-CGCccgaGCGACcAGAGAUCCCGCc -3'
miRNA:   3'- -CCUAgaGCG----CGUUGcUUUUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 58815 0.67 0.939548
Target:  5'- cGGG-CUCGCGCuGCucGGcACCCuCGCc -3'
miRNA:   3'- -CCUaGAGCGCGuUGcuUUuUGGG-GCG- -5'
23509 3' -50.3 NC_005259.1 + 68303 0.67 0.939548
Target:  5'- gGGAUCgggCGCGUccGGCGAcGGGAUCUCGa -3'
miRNA:   3'- -CCUAGa--GCGCG--UUGCU-UUUUGGGGCg -5'
23509 3' -50.3 NC_005259.1 + 49357 0.67 0.939548
Target:  5'- aGGUgC-CGCGCGAUGAAGAGgCCgGUg -3'
miRNA:   3'- cCUA-GaGCGCGUUGCUUUUUgGGgCG- -5'
23509 3' -50.3 NC_005259.1 + 41670 0.67 0.934299
Target:  5'- gGGAUCUgcacCGCGU-GCGu--GGCCaCCGCg -3'
miRNA:   3'- -CCUAGA----GCGCGuUGCuuuUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 6194 0.67 0.934299
Target:  5'- uGAUCUgagcaGCGUgAGCGGGguGAGCCgCCGCg -3'
miRNA:   3'- cCUAGAg----CGCG-UUGCUU--UUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 7746 0.67 0.93267
Target:  5'- aGGA---CGCGgucaccgucugagaCAACaGAGAAACCCCGCc -3'
miRNA:   3'- -CCUagaGCGC--------------GUUG-CUUUUUGGGGCG- -5'
23509 3' -50.3 NC_005259.1 + 43193 0.68 0.928771
Target:  5'- cGAcCUCG-GCGGCGAugucGACgCCCGCc -3'
miRNA:   3'- cCUaGAGCgCGUUGCUuu--UUG-GGGCG- -5'
23509 3' -50.3 NC_005259.1 + 4338 0.68 0.928771
Target:  5'- cGGAcCUCGuCGCggUGAuGAGCgCCGg -3'
miRNA:   3'- -CCUaGAGC-GCGuuGCUuUUUGgGGCg -5'
23509 3' -50.3 NC_005259.1 + 17739 0.68 0.928771
Target:  5'- uGGcugCUCGaCGCGAucCGuGAGGCCgCCGCg -3'
miRNA:   3'- -CCua-GAGC-GCGUU--GCuUUUUGG-GGCG- -5'
23509 3' -50.3 NC_005259.1 + 31298 0.68 0.928771
Target:  5'- cGGUCU-GCGCAACGAGcuuGCCgagaCCGUu -3'
miRNA:   3'- cCUAGAgCGCGUUGCUUuu-UGG----GGCG- -5'
23509 3' -50.3 NC_005259.1 + 7220 0.68 0.922962
Target:  5'- uGGAUCU-GCGUGAUGAAcGACggcagCCGCg -3'
miRNA:   3'- -CCUAGAgCGCGUUGCUUuUUGg----GGCG- -5'
23509 3' -50.3 NC_005259.1 + 1682 0.68 0.922962
Target:  5'- cGAUCUgCGCGCccgcaagcGCGAAcucAAGCgCCGCc -3'
miRNA:   3'- cCUAGA-GCGCGu-------UGCUU---UUUGgGGCG- -5'
23509 3' -50.3 NC_005259.1 + 52001 0.68 0.916873
Target:  5'- cGAUCUCGaccggauGCAcgaGCGucAGGCCgCCGCa -3'
miRNA:   3'- cCUAGAGCg------CGU---UGCuuUUUGG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.