Results 21 - 40 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 7746 | 0.67 | 0.93267 |
Target: 5'- aGGA---CGCGgucaccgucugagaCAACaGAGAAACCCCGCc -3' miRNA: 3'- -CCUagaGCGC--------------GUUG-CUUUUUGGGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 31845 | 0.67 | 0.954067 |
Target: 5'- --uUCUCGCGCGugaccgcgucauugGCGAucuugucggucguGACCUCGCc -3' miRNA: 3'- ccuAGAGCGCGU--------------UGCUuu-----------UUGGGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 64826 | 0.67 | 0.953639 |
Target: 5'- uGAg--CGUGUggUGAcgGACCCUGCu -3' miRNA: 3'- cCUagaGCGCGuuGCUuuUUGGGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 33385 | 0.67 | 0.953639 |
Target: 5'- cGGUCcgccgaGCGCGACGAGccguguCCaCCGCg -3' miRNA: 3'- cCUAGag----CGCGUUGCUUuuu---GG-GGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 63696 | 0.67 | 0.953639 |
Target: 5'- gGGAUCUgCGCcugccCAGCGggGAucggGgCCUGCg -3' miRNA: 3'- -CCUAGA-GCGc----GUUGCuuUU----UgGGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 58481 | 0.67 | 0.949215 |
Target: 5'- uGGcUgUCGC-CGACGAcaucGACCUCGCg -3' miRNA: 3'- -CCuAgAGCGcGUUGCUuu--UUGGGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 68303 | 0.67 | 0.939548 |
Target: 5'- gGGAUCgggCGCGUccGGCGAcGGGAUCUCGa -3' miRNA: 3'- -CCUAGa--GCGCG--UUGCU-UUUUGGGGCg -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 58815 | 0.67 | 0.939548 |
Target: 5'- cGGG-CUCGCGCuGCucGGcACCCuCGCc -3' miRNA: 3'- -CCUaGAGCGCGuUGcuUUuUGGG-GCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 49357 | 0.67 | 0.939548 |
Target: 5'- aGGUgC-CGCGCGAUGAAGAGgCCgGUg -3' miRNA: 3'- cCUA-GaGCGCGUUGCUUUUUgGGgCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 16541 | 0.67 | 0.939548 |
Target: 5'- aGGGUg-CGCccgaGCGACcAGAGAUCCCGCc -3' miRNA: 3'- -CCUAgaGCG----CGUUGcUUUUUGGGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 41670 | 0.67 | 0.934299 |
Target: 5'- gGGAUCUgcacCGCGU-GCGu--GGCCaCCGCg -3' miRNA: 3'- -CCUAGA----GCGCGuUGCuuuUUGG-GGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 6194 | 0.67 | 0.934299 |
Target: 5'- uGAUCUgagcaGCGUgAGCGGGguGAGCCgCCGCg -3' miRNA: 3'- cCUAGAg----CGCG-UUGCUU--UUUGG-GGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 36323 | 0.67 | 0.944519 |
Target: 5'- gGGAUCaUGUugGCaAACGAA-AugCCCGCg -3' miRNA: 3'- -CCUAGaGCG--CG-UUGCUUuUugGGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 52001 | 0.68 | 0.916873 |
Target: 5'- cGAUCUCGaccggauGCAcgaGCGucAGGCCgCCGCa -3' miRNA: 3'- cCUAGAGCg------CGU---UGCuuUUUGG-GGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 7220 | 0.68 | 0.922962 |
Target: 5'- uGGAUCU-GCGUGAUGAAcGACggcagCCGCg -3' miRNA: 3'- -CCUAGAgCGCGUUGCUUuUUGg----GGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 1682 | 0.68 | 0.922962 |
Target: 5'- cGAUCUgCGCGCccgcaagcGCGAAcucAAGCgCCGCc -3' miRNA: 3'- cCUAGA-GCGCGu-------UGCUU---UUUGgGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 4338 | 0.68 | 0.928771 |
Target: 5'- cGGAcCUCGuCGCggUGAuGAGCgCCGg -3' miRNA: 3'- -CCUaGAGC-GCGuuGCUuUUUGgGGCg -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 43193 | 0.68 | 0.928771 |
Target: 5'- cGAcCUCG-GCGGCGAugucGACgCCCGCc -3' miRNA: 3'- cCUaGAGCgCGUUGCUuu--UUG-GGGCG- -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 18171 | 0.68 | 0.916873 |
Target: 5'- cGGAUCUgGCaGU--CGAGGucGACCCCGa -3' miRNA: 3'- -CCUAGAgCG-CGuuGCUUU--UUGGGGCg -5' |
|||||||
23509 | 3' | -50.3 | NC_005259.1 | + | 17739 | 0.68 | 0.928771 |
Target: 5'- uGGcugCUCGaCGCGAucCGuGAGGCCgCCGCg -3' miRNA: 3'- -CCua-GAGC-GCGUU--GCuUUUUGG-GGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home