Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23510 | 3' | -58.5 | NC_005259.1 | + | 68802 | 0.69 | 0.476001 |
Target: 5'- gGGCGGUGUCGgugcccgguacauGCucucggucaaagcaGUCGGUGAGGUgGGc -3' miRNA: 3'- -CUGCCACGGC-------------UG--------------UAGCCGCUCCAgCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 32637 | 0.69 | 0.489562 |
Target: 5'- -uCGGUacGCCG-CAUUGGcCGGGGUgGGg -3' miRNA: 3'- cuGCCA--CGGCuGUAGCC-GCUCCAgCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 67208 | 0.68 | 0.499358 |
Target: 5'- -----cGCCGcUGUCGGCGGGGUCGa -3' miRNA: 3'- cugccaCGGCuGUAGCCGCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 50987 | 0.68 | 0.548507 |
Target: 5'- aGCGGUGUCGAguCAcCGGCGAaaaaccggacguuGGUCGu -3' miRNA: 3'- cUGCCACGGCU--GUaGCCGCU-------------CCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 17330 | 0.68 | 0.539353 |
Target: 5'- cGAgGGUguGCCGgucaACGUCGccguCGAGGUCGGc -3' miRNA: 3'- -CUgCCA--CGGC----UGUAGCc---GCUCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 35983 | 0.68 | 0.539353 |
Target: 5'- cGGCGGgaaaCCGA---CGGCGAGGcCGGa -3' miRNA: 3'- -CUGCCac--GGCUguaGCCGCUCCaGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 56921 | 0.68 | 0.539353 |
Target: 5'- aGGC-GUGCCcGCGUCGGUGAgcaugcGGUUGGc -3' miRNA: 3'- -CUGcCACGGcUGUAGCCGCU------CCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 28002 | 0.68 | 0.529243 |
Target: 5'- --gGGUGCCGG----GGCGGGGUCGc -3' miRNA: 3'- cugCCACGGCUguagCCGCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 56179 | 0.68 | 0.528236 |
Target: 5'- cACGGUGCCGACAUaCGcguuGCGcgagcugugcucaAGGaUCGGu -3' miRNA: 3'- cUGCCACGGCUGUA-GC----CGC-------------UCC-AGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 39416 | 0.68 | 0.519203 |
Target: 5'- aGGCGGUGCCgGACAccgucaaugagUCGaGCGuGaUCGGa -3' miRNA: 3'- -CUGCCACGG-CUGU-----------AGC-CGCuCcAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 66664 | 0.68 | 0.498375 |
Target: 5'- cGGCGGUGCUGcgaugcuCAUCGuGCcgcccauGAGGUCGa -3' miRNA: 3'- -CUGCCACGGCu------GUAGC-CG-------CUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 10942 | 0.68 | 0.529243 |
Target: 5'- -uCGGUGUCGACcucGUCGGUGucGGUCu- -3' miRNA: 3'- cuGCCACGGCUG---UAGCCGCu-CCAGcc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 23290 | 0.67 | 0.601149 |
Target: 5'- cGCGGUGguuggguaUCGGgGUcCGGCGcGGUCGGu -3' miRNA: 3'- cUGCCAC--------GGCUgUA-GCCGCuCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 9161 | 0.67 | 0.611574 |
Target: 5'- cGACGGcaUGCCGguggcagccgauGCAaUGGuCGAGGUCGu -3' miRNA: 3'- -CUGCC--ACGGC------------UGUaGCC-GCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 36163 | 0.67 | 0.590748 |
Target: 5'- cACGGUGaCGACcUUGcCGAGGUCGa -3' miRNA: 3'- cUGCCACgGCUGuAGCcGCUCCAGCc -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 27063 | 0.67 | 0.590748 |
Target: 5'- cGACGGUcacggcgacaucGCCGACAUucugCGGCGGcugccaugcGGUgGGc -3' miRNA: 3'- -CUGCCA------------CGGCUGUA----GCCGCU---------CCAgCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 9031 | 0.67 | 0.580378 |
Target: 5'- cGCGGUGCuCGAUcaUGuGCGGGG-CGGu -3' miRNA: 3'- cUGCCACG-GCUGuaGC-CGCUCCaGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 34563 | 0.67 | 0.570046 |
Target: 5'- -uCGGgGCCGA---CGGCGAGGuucUCGGa -3' miRNA: 3'- cuGCCaCGGCUguaGCCGCUCC---AGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 57403 | 0.66 | 0.62306 |
Target: 5'- cACGGUGCCcgcucucagucugcuGcuaccggcucgcuuACG-CGGCGAGGUUGGu -3' miRNA: 3'- cUGCCACGG---------------C--------------UGUaGCCGCUCCAGCC- -5' |
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23510 | 3' | -58.5 | NC_005259.1 | + | 42459 | 0.66 | 0.642914 |
Target: 5'- aACaGUcGCCGACuaCGGCGAGGccCGGc -3' miRNA: 3'- cUGcCA-CGGCUGuaGCCGCUCCa-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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