miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23510 5' -50.2 NC_005259.1 + 12346 0.76 0.515147
Target:  5'- cCGCCGCCUCGAAAccGGCcucgcGACCGa -3'
miRNA:   3'- -GUGGCGGAGCUUUuaCUGcaa--CUGGU- -5'
23510 5' -50.2 NC_005259.1 + 45750 0.76 0.525889
Target:  5'- gCACCGCCUCGggGAUGAgcacgcccucgcCGgguGCCAg -3'
miRNA:   3'- -GUGGCGGAGCuuUUACU------------GCaacUGGU- -5'
23510 5' -50.2 NC_005259.1 + 6579 0.73 0.647809
Target:  5'- gGCCGCCUCGGAcaAAUGGCuc-GACUAc -3'
miRNA:   3'- gUGGCGGAGCUU--UUACUGcaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 10574 0.73 0.659002
Target:  5'- gCGCCGCCUCGAcgGcGAaaucgucguUGUUGACCu -3'
miRNA:   3'- -GUGGCGGAGCUuuUaCU---------GCAACUGGu -5'
23510 5' -50.2 NC_005259.1 + 43292 0.72 0.703401
Target:  5'- cCGCCGCCgacgCGcccgccuGAAUGgcuGCGUUGGCCAc -3'
miRNA:   3'- -GUGGCGGa---GCu------UUUAC---UGCAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 31199 0.71 0.777853
Target:  5'- uGCCGCCgaaGAucgGGAUGcCGUUGAUCAg -3'
miRNA:   3'- gUGGCGGag-CU---UUUACuGCAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 38683 0.71 0.781914
Target:  5'- gGCCGCCgggUCGAGGuUGGCcaccugagacuguagGUUGACCAc -3'
miRNA:   3'- gUGGCGG---AGCUUUuACUG---------------CAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 16671 0.7 0.807654
Target:  5'- gACCGCCUCGA---UGugGUcGGCg- -3'
miRNA:   3'- gUGGCGGAGCUuuuACugCAaCUGgu -5'
23510 5' -50.2 NC_005259.1 + 56490 0.7 0.807654
Target:  5'- aACCGuCCUCGAcgGUGGCGaUGAUUc -3'
miRNA:   3'- gUGGC-GGAGCUuuUACUGCaACUGGu -5'
23510 5' -50.2 NC_005259.1 + 44472 0.7 0.807654
Target:  5'- cCGCCGCCcuggcCGGGccaguuGGUGACGUaGACCGg -3'
miRNA:   3'- -GUGGCGGa----GCUU------UUACUGCAaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 61864 0.7 0.826586
Target:  5'- cCACCGCCUCGc--GUGcCGcgUGAUCAc -3'
miRNA:   3'- -GUGGCGGAGCuuuUACuGCa-ACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 20178 0.7 0.844669
Target:  5'- cCGCCGCCUCGGc--UGACGa-GAUCGc -3'
miRNA:   3'- -GUGGCGGAGCUuuuACUGCaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 58709 0.69 0.853368
Target:  5'- cCGCCGCCgucaccaucgcCGggGGUGuCGUUGGCa- -3'
miRNA:   3'- -GUGGCGGa----------GCuuUUACuGCAACUGgu -5'
23510 5' -50.2 NC_005259.1 + 55538 0.69 0.861826
Target:  5'- gCGCCGCCUCGu---UGGCGUcgagGauGCCGa -3'
miRNA:   3'- -GUGGCGGAGCuuuuACUGCAa---C--UGGU- -5'
23510 5' -50.2 NC_005259.1 + 59508 0.69 0.88568
Target:  5'- uCACCGCCcggCGAAu-UGcUGUUGGCCu -3'
miRNA:   3'- -GUGGCGGa--GCUUuuACuGCAACUGGu -5'
23510 5' -50.2 NC_005259.1 + 59077 0.68 0.891638
Target:  5'- uCACCgGCCUUGuggcgggcaguGAUGACGUUGAUg- -3'
miRNA:   3'- -GUGG-CGGAGCuu---------UUACUGCAACUGgu -5'
23510 5' -50.2 NC_005259.1 + 28590 0.68 0.897422
Target:  5'- aCGCCGCCaucgcgcugcugaCGAAAuUGAUGaUGGCCAa -3'
miRNA:   3'- -GUGGCGGa------------GCUUUuACUGCaACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 14723 0.68 0.900248
Target:  5'- aCGCCGCgCUCGucgccGAGAUGuacGCGcUGGCCGg -3'
miRNA:   3'- -GUGGCG-GAGC-----UUUUAC---UGCaACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 28856 0.68 0.907116
Target:  5'- gACCGCCccacCGAGg--GACGUUGgGCCGg -3'
miRNA:   3'- gUGGCGGa---GCUUuuaCUGCAAC-UGGU- -5'
23510 5' -50.2 NC_005259.1 + 8064 0.68 0.907116
Target:  5'- uCGCCGCCgacaUCGAGAucgugccgcgcUGGCG-UGACCGu -3'
miRNA:   3'- -GUGGCGG----AGCUUUu----------ACUGCaACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.