miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23510 5' -50.2 NC_005259.1 + 6579 0.73 0.647809
Target:  5'- gGCCGCCUCGGAcaAAUGGCuc-GACUAc -3'
miRNA:   3'- gUGGCGGAGCUU--UUACUGcaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 8064 0.68 0.907116
Target:  5'- uCGCCGCCgacaUCGAGAucgugccgcgcUGGCG-UGACCGu -3'
miRNA:   3'- -GUGGCGG----AGCUUUu----------ACUGCaACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 8311 0.67 0.931746
Target:  5'- aCGCCGCCUUGucGGAgcugccGACGgcGAUCAg -3'
miRNA:   3'- -GUGGCGGAGCu-UUUa-----CUGCaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 10574 0.73 0.659002
Target:  5'- gCGCCGCCUCGAcgGcGAaaucgucguUGUUGACCu -3'
miRNA:   3'- -GUGGCGGAGCUuuUaCU---------GCAACUGGu -5'
23510 5' -50.2 NC_005259.1 + 12346 0.76 0.515147
Target:  5'- cCGCCGCCUCGAAAccGGCcucgcGACCGa -3'
miRNA:   3'- -GUGGCGGAGCUUUuaCUGcaa--CUGGU- -5'
23510 5' -50.2 NC_005259.1 + 13709 0.67 0.926018
Target:  5'- -cCCGCCUCGAcaccgacaaucgAGGUGcCGUgaUGGCCc -3'
miRNA:   3'- guGGCGGAGCU------------UUUACuGCA--ACUGGu -5'
23510 5' -50.2 NC_005259.1 + 14723 0.68 0.900248
Target:  5'- aCGCCGCgCUCGucgccGAGAUGuacGCGcUGGCCGg -3'
miRNA:   3'- -GUGGCG-GAGC-----UUUUAC---UGCaACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 16671 0.7 0.807654
Target:  5'- gACCGCCUCGA---UGugGUcGGCg- -3'
miRNA:   3'- gUGGCGGAGCUuuuACugCAaCUGgu -5'
23510 5' -50.2 NC_005259.1 + 17463 0.67 0.931746
Target:  5'- cCACCGCCcacCGu-GGUGACGcccGGCCAu -3'
miRNA:   3'- -GUGGCGGa--GCuuUUACUGCaa-CUGGU- -5'
23510 5' -50.2 NC_005259.1 + 19719 0.66 0.967477
Target:  5'- uGCCGCCgaggUGAuc--GACGggGACUAg -3'
miRNA:   3'- gUGGCGGa---GCUuuuaCUGCaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 20178 0.7 0.844669
Target:  5'- cCGCCGCCUCGGc--UGACGa-GAUCGc -3'
miRNA:   3'- -GUGGCGGAGCUuuuACUGCaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 20724 0.66 0.956127
Target:  5'- -cCCGCCgCGcGAAAUGACGUauUGGuCCGg -3'
miRNA:   3'- guGGCGGaGC-UUUUACUGCA--ACU-GGU- -5'
23510 5' -50.2 NC_005259.1 + 26508 0.66 0.951809
Target:  5'- uCGCCGCCcggCGAGAAgaGCGcggugagcagcUUGGCCAc -3'
miRNA:   3'- -GUGGCGGa--GCUUUUacUGC-----------AACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 28590 0.68 0.897422
Target:  5'- aCGCCGCCaucgcgcugcugaCGAAAuUGAUGaUGGCCAa -3'
miRNA:   3'- -GUGGCGGa------------GCUUUuACUGCaACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 28660 0.66 0.967477
Target:  5'- gGCCGCCgucaaGAucAUGACGU-GGCUc -3'
miRNA:   3'- gUGGCGGag---CUuuUACUGCAaCUGGu -5'
23510 5' -50.2 NC_005259.1 + 28856 0.68 0.907116
Target:  5'- gACCGCCccacCGAGg--GACGUUGgGCCGg -3'
miRNA:   3'- gUGGCGGa---GCUUuuaCUGCAAC-UGGU- -5'
23510 5' -50.2 NC_005259.1 + 29668 0.66 0.967477
Target:  5'- gACCGCCUCGuugccgGACGc--GCCGc -3'
miRNA:   3'- gUGGCGGAGCuuuua-CUGCaacUGGU- -5'
23510 5' -50.2 NC_005259.1 + 29914 0.66 0.956127
Target:  5'- gGCUGCC-CGAGAccAUcGACGcgUGGCCGc -3'
miRNA:   3'- gUGGCGGaGCUUU--UA-CUGCa-ACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 31199 0.71 0.777853
Target:  5'- uGCCGCCgaaGAucgGGAUGcCGUUGAUCAg -3'
miRNA:   3'- gUGGCGGag-CU---UUUACuGCAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 32556 0.66 0.956127
Target:  5'- gGCCGCCccggcgagcgCGggGAUaGCGUUGGgCAg -3'
miRNA:   3'- gUGGCGGa---------GCuuUUAcUGCAACUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.