miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23510 5' -50.2 NC_005259.1 + 38683 0.71 0.781914
Target:  5'- gGCCGCCgggUCGAGGuUGGCcaccugagacuguagGUUGACCAc -3'
miRNA:   3'- gUGGCGG---AGCUUUuACUG---------------CAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 38995 0.66 0.956127
Target:  5'- uGCCcaGCCUCGuuGAgcGCGgUGACCAg -3'
miRNA:   3'- gUGG--CGGAGCuuUUacUGCaACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 41481 0.68 0.920003
Target:  5'- aCGCCGucgagcacgaCCUCGGcgGUGGCGggcaGACCGu -3'
miRNA:   3'- -GUGGC----------GGAGCUuuUACUGCaa--CUGGU- -5'
23510 5' -50.2 NC_005259.1 + 41740 0.66 0.956127
Target:  5'- aCACCGCCUCGAc----ACGcucGACCu -3'
miRNA:   3'- -GUGGCGGAGCUuuuacUGCaa-CUGGu -5'
23510 5' -50.2 NC_005259.1 + 42956 0.67 0.926018
Target:  5'- gGCCGCCguugUCGAAcggGAUGcCGggGAUCAu -3'
miRNA:   3'- gUGGCGG----AGCUU---UUACuGCaaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 43292 0.72 0.703401
Target:  5'- cCGCCGCCgacgCGcccgccuGAAUGgcuGCGUUGGCCAc -3'
miRNA:   3'- -GUGGCGGa---GCu------UUUAC---UGCAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 43442 0.66 0.963954
Target:  5'- gGCUGCgCUCGAugagacccgAGGUGuCGUUGAgCAa -3'
miRNA:   3'- gUGGCG-GAGCU---------UUUACuGCAACUgGU- -5'
23510 5' -50.2 NC_005259.1 + 44472 0.7 0.807654
Target:  5'- cCGCCGCCcuggcCGGGccaguuGGUGACGUaGACCGg -3'
miRNA:   3'- -GUGGCGGa----GCUU------UUACUGCAaCUGGU- -5'
23510 5' -50.2 NC_005259.1 + 45750 0.76 0.525889
Target:  5'- gCACCGCCUCGggGAUGAgcacgcccucgcCGgguGCCAg -3'
miRNA:   3'- -GUGGCGGAGCuuUUACU------------GCaacUGGU- -5'
23510 5' -50.2 NC_005259.1 + 46947 0.67 0.926018
Target:  5'- gCGCCGCCgaccgCGuuGAgcuUGUUGGCCAc -3'
miRNA:   3'- -GUGGCGGa----GCuuUUacuGCAACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 48627 0.66 0.967477
Target:  5'- gCACUGCCUCGccGA-GACGggcuGCCAg -3'
miRNA:   3'- -GUGGCGGAGCuuUUaCUGCaac-UGGU- -5'
23510 5' -50.2 NC_005259.1 + 50214 0.68 0.916257
Target:  5'- gCGCCGCCUCGucAAUcucgauccgagcgcgGGCGcggaucgUGGCCAa -3'
miRNA:   3'- -GUGGCGGAGCuuUUA---------------CUGCa------ACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 55538 0.69 0.861826
Target:  5'- gCGCCGCCUCGu---UGGCGUcgagGauGCCGa -3'
miRNA:   3'- -GUGGCGGAGCuuuuACUGCAa---C--UGGU- -5'
23510 5' -50.2 NC_005259.1 + 55923 0.67 0.947217
Target:  5'- gACCGCUggucugcucggCGAGAccGAgGUUGACCc -3'
miRNA:   3'- gUGGCGGa----------GCUUUuaCUgCAACUGGu -5'
23510 5' -50.2 NC_005259.1 + 56490 0.7 0.807654
Target:  5'- aACCGuCCUCGAcgGUGGCGaUGAUUc -3'
miRNA:   3'- gUGGC-GGAGCUuuUACUGCaACUGGu -5'
23510 5' -50.2 NC_005259.1 + 58709 0.69 0.853368
Target:  5'- cCGCCGCCgucaccaucgcCGggGGUGuCGUUGGCa- -3'
miRNA:   3'- -GUGGCGGa----------GCuuUUACuGCAACUGgu -5'
23510 5' -50.2 NC_005259.1 + 59077 0.68 0.891638
Target:  5'- uCACCgGCCUUGuggcgggcaguGAUGACGUUGAUg- -3'
miRNA:   3'- -GUGG-CGGAGCuu---------UUACUGCAACUGgu -5'
23510 5' -50.2 NC_005259.1 + 59508 0.69 0.88568
Target:  5'- uCACCGCCcggCGAAu-UGcUGUUGGCCu -3'
miRNA:   3'- -GUGGCGGa--GCUUuuACuGCAACUGGu -5'
23510 5' -50.2 NC_005259.1 + 61864 0.7 0.826586
Target:  5'- cCACCGCCUCGc--GUGcCGcgUGAUCAc -3'
miRNA:   3'- -GUGGCGGAGCuuuUACuGCa-ACUGGU- -5'
23510 5' -50.2 NC_005259.1 + 66687 0.67 0.931186
Target:  5'- uGCCGCCcaugaggUCGAAAAUGGUGUcGugCAc -3'
miRNA:   3'- gUGGCGG-------AGCUUUUACUGCAaCugGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.