Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 50500 | 0.67 | 0.771308 |
Target: 5'- gCCgGUCGAUGUgggCGGUgcGCUGCACCucgacgcGCUCg -3' miRNA: 3'- -GG-CAGCUGUA---GCCA--UGGCGUGG-------UGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 8129 | 0.67 | 0.782041 |
Target: 5'- -aGUCGGCuacgGGUGCCccGCGCC-CUCg -3' miRNA: 3'- ggCAGCUGuag-CCAUGG--CGUGGuGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 61007 | 0.67 | 0.790691 |
Target: 5'- cCCGUCGACGgugagcuuccacUCGGUggcggcgaggucgACCGacggGCgGCUCa -3' miRNA: 3'- -GGCAGCUGU------------AGCCA-------------UGGCg---UGgUGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 61922 | 0.68 | 0.72065 |
Target: 5'- gUCGUCGGCAgcUCGGUcucucgcgcggguGCCGgggcCACCGCa- -3' miRNA: 3'- -GGCAGCUGU--AGCCA-------------UGGC----GUGGUGag -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 48950 | 0.68 | 0.721688 |
Target: 5'- aCCGUCGguuACAUCGGcaacgcCCGCAUgGgUCg -3' miRNA: 3'- -GGCAGC---UGUAGCCau----GGCGUGgUgAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 18782 | 0.68 | 0.73202 |
Target: 5'- gCgGUgGGCAagCGGUggcagggacGCCGCACC-CUCa -3' miRNA: 3'- -GgCAgCUGUa-GCCA---------UGGCGUGGuGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 35623 | 0.68 | 0.73202 |
Target: 5'- gCGUCGAguaguUCGG-GCCGCcGCCGCUg -3' miRNA: 3'- gGCAGCUgu---AGCCaUGGCG-UGGUGAg -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 53699 | 0.68 | 0.73202 |
Target: 5'- aCCGgucaaCGugAacgUGGUcACCGCGCCGCUg -3' miRNA: 3'- -GGCa----GCugUa--GCCA-UGGCGUGGUGAg -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 9272 | 0.68 | 0.73202 |
Target: 5'- cCCGaaaCGGCGaguuaugCGGUGCCGC-CaCGCUCg -3' miRNA: 3'- -GGCa--GCUGUa------GCCAUGGCGuG-GUGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 50673 | 0.68 | 0.742256 |
Target: 5'- aCCaG-CG-CGUCGGUGCCgacgagGCGCUGCUCg -3' miRNA: 3'- -GG-CaGCuGUAGCCAUGG------CGUGGUGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 6446 | 0.68 | 0.73202 |
Target: 5'- aCCGUCGcgcugaucggcaGCGUcgcCGGUGCCcuGUACCcGCUCa -3' miRNA: 3'- -GGCAGC------------UGUA---GCCAUGG--CGUGG-UGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 39474 | 0.68 | 0.715448 |
Target: 5'- gCCGUCgucgcgguagcacgaGAUAUCGaGcuugaugGCCGCGCCGCUg -3' miRNA: 3'- -GGCAG---------------CUGUAGC-Ca------UGGCGUGGUGAg -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 13454 | 0.68 | 0.711272 |
Target: 5'- aCCGUCGGCGcggcgcUGGUgcucACCGCGCUGCcCg -3' miRNA: 3'- -GGCAGCUGUa-----GCCA----UGGCGUGGUGaG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 1430 | 0.68 | 0.711272 |
Target: 5'- aCGUCGuGC-UCGGgcUgGCACUGCUCg -3' miRNA: 3'- gGCAGC-UGuAGCCauGgCGUGGUGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 26996 | 0.68 | 0.710226 |
Target: 5'- aCGuUCGACGuuUCGGUcuugaacGCCGCGCCguaGCUg -3' miRNA: 3'- gGC-AGCUGU--AGCCA-------UGGCGUGG---UGAg -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 5905 | 0.68 | 0.700782 |
Target: 5'- aCGUCGAgGUCgaGGUGCugCGCACCG-UCg -3' miRNA: 3'- gGCAGCUgUAG--CCAUG--GCGUGGUgAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 34865 | 0.68 | 0.711272 |
Target: 5'- gUGUCcuCGUCGGUGCCGgACCGgggugcCUCg -3' miRNA: 3'- gGCAGcuGUAGCCAUGGCgUGGU------GAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 60552 | 0.69 | 0.679622 |
Target: 5'- cUCGUCGGCAUgccCGGUGCCGa--CGgUCa -3' miRNA: 3'- -GGCAGCUGUA---GCCAUGGCgugGUgAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 38164 | 0.69 | 0.668973 |
Target: 5'- gCCGaUGACGgugaUCGGUGCCucgucGCugUACUCg -3' miRNA: 3'- -GGCaGCUGU----AGCCAUGG-----CGugGUGAG- -5' |
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23511 | 3' | -54.8 | NC_005259.1 | + | 20479 | 0.69 | 0.668973 |
Target: 5'- gCCGUCGACcUCGacACCGC-CCggcaGCUCa -3' miRNA: 3'- -GGCAGCUGuAGCcaUGGCGuGG----UGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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