miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 3' -54.8 NC_005259.1 + 20479 0.69 0.668973
Target:  5'- gCCGUCGACcUCGacACCGC-CCggcaGCUCa -3'
miRNA:   3'- -GGCAGCUGuAGCcaUGGCGuGG----UGAG- -5'
23511 3' -54.8 NC_005259.1 + 22143 0.67 0.762403
Target:  5'- aCGUCGGCAUC-GUGCgCGCcgaaauggaugACCACa- -3'
miRNA:   3'- gGCAGCUGUAGcCAUG-GCG-----------UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 22637 0.67 0.77229
Target:  5'- uUCGcCG-CGUCGGUcgacGCCGCccACCACaUCg -3'
miRNA:   3'- -GGCaGCuGUAGCCA----UGGCG--UGGUG-AG- -5'
23511 3' -54.8 NC_005259.1 + 23474 0.73 0.43192
Target:  5'- gCC-UCGGCAuugUCGGUGCCGaCGCCAUg- -3'
miRNA:   3'- -GGcAGCUGU---AGCCAUGGC-GUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 24053 0.74 0.395443
Target:  5'- gUCGUCGGCG-CGGUGCUcaaucucguGCACCGCg- -3'
miRNA:   3'- -GGCAGCUGUaGCCAUGG---------CGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 26996 0.68 0.710226
Target:  5'- aCGuUCGACGuuUCGGUcuugaacGCCGCGCCguaGCUg -3'
miRNA:   3'- gGC-AGCUGU--AGCCA-------UGGCGUGG---UGAg -5'
23511 3' -54.8 NC_005259.1 + 27662 0.7 0.583392
Target:  5'- gUGUCGACAUCGagccauuuGUugCGCgACCACg- -3'
miRNA:   3'- gGCAGCUGUAGC--------CAugGCG-UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 28963 0.74 0.395443
Target:  5'- aUCGcCGAgGUCGGUGCCGagGCCGCg- -3'
miRNA:   3'- -GGCaGCUgUAGCCAUGGCg-UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 31624 0.66 0.837097
Target:  5'- uUGUCGcCAgcgCGuuGUACUGCGCCACg- -3'
miRNA:   3'- gGCAGCuGUa--GC--CAUGGCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 32826 0.66 0.82838
Target:  5'- gCCGUCGAUAUUGGUGuucuCC-CAgaACUCu -3'
miRNA:   3'- -GGCAGCUGUAGCCAU----GGcGUggUGAG- -5'
23511 3' -54.8 NC_005259.1 + 34865 0.68 0.711272
Target:  5'- gUGUCcuCGUCGGUGCCGgACCGgggugcCUCg -3'
miRNA:   3'- gGCAGcuGUAGCCAUGGCgUGGU------GAG- -5'
23511 3' -54.8 NC_005259.1 + 35623 0.68 0.73202
Target:  5'- gCGUCGAguaguUCGG-GCCGCcGCCGCUg -3'
miRNA:   3'- gGCAGCUgu---AGCCaUGGCG-UGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 36888 0.66 0.837097
Target:  5'- gCCGaCGACGcCGGUGagCGCcCCACUg -3'
miRNA:   3'- -GGCaGCUGUaGCCAUg-GCGuGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 37035 0.7 0.583392
Target:  5'- aUGUCGAUcUUGGUGCC-CGCCAC-Cg -3'
miRNA:   3'- gGCAGCUGuAGCCAUGGcGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 38164 0.69 0.668973
Target:  5'- gCCGaUGACGgugaUCGGUGCCucgucGCugUACUCg -3'
miRNA:   3'- -GGCaGCUGU----AGCCAUGG-----CGugGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 38929 0.66 0.801089
Target:  5'- aCGUCGGUGUugcugugccCGGUGCCGCuGCCGC-Cg -3'
miRNA:   3'- gGCAGCUGUA---------GCCAUGGCG-UGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 39474 0.68 0.715448
Target:  5'- gCCGUCgucgcgguagcacgaGAUAUCGaGcuugaugGCCGCGCCGCUg -3'
miRNA:   3'- -GGCAG---------------CUGUAGC-Ca------UGGCGUGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 40148 0.72 0.500171
Target:  5'- gCCGUCGguuGUCGGUGCC-CGCCccggcaGCUCg -3'
miRNA:   3'- -GGCAGCug-UAGCCAUGGcGUGG------UGAG- -5'
23511 3' -54.8 NC_005259.1 + 41320 0.66 0.843924
Target:  5'- -gGUCGACcucgaaaagggCGGUGCCGUcggauACCACg- -3'
miRNA:   3'- ggCAGCUGua---------GCCAUGGCG-----UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 41378 0.69 0.636868
Target:  5'- gCgGUCGAgCuuggcCGGUACCcauggcGCGCCGCUCg -3'
miRNA:   3'- -GgCAGCU-Gua---GCCAUGG------CGUGGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.