miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 3' -54.8 NC_005259.1 + 1430 0.68 0.711272
Target:  5'- aCGUCGuGC-UCGGgcUgGCACUGCUCg -3'
miRNA:   3'- gGCAGC-UGuAGCCauGgCGUGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 3128 0.7 0.583392
Target:  5'- aCCGUgGGCAgCGG-ACgGCACCGCcCg -3'
miRNA:   3'- -GGCAgCUGUaGCCaUGgCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 3173 0.75 0.344602
Target:  5'- cCCGgCGAugucaagguCGUCGGUGCgCGCACCACg- -3'
miRNA:   3'- -GGCaGCU---------GUAGCCAUG-GCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 3709 0.66 0.837097
Target:  5'- aCCGgCGACcucuUCcGUAuCCGCACC-CUCa -3'
miRNA:   3'- -GGCaGCUGu---AGcCAU-GGCGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 3855 0.66 0.819467
Target:  5'- aCCGUCGACGcCGGUcgaGCGCCuCg- -3'
miRNA:   3'- -GGCAGCUGUaGCCAuggCGUGGuGag -5'
23511 3' -54.8 NC_005259.1 + 5284 0.67 0.762403
Target:  5'- gUCGUUGACAUCGaGUcACCGgugGCCucACUCg -3'
miRNA:   3'- -GGCAGCUGUAGC-CA-UGGCg--UGG--UGAG- -5'
23511 3' -54.8 NC_005259.1 + 5905 0.68 0.700782
Target:  5'- aCGUCGAgGUCgaGGUGCugCGCACCG-UCg -3'
miRNA:   3'- gGCAGCUgUAG--CCAUG--GCGUGGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 6446 0.68 0.73202
Target:  5'- aCCGUCGcgcugaucggcaGCGUcgcCGGUGCCcuGUACCcGCUCa -3'
miRNA:   3'- -GGCAGC------------UGUA---GCCAUGG--CGUGG-UGAG- -5'
23511 3' -54.8 NC_005259.1 + 7424 0.74 0.369424
Target:  5'- gCCGUCGg---CGGUGcCCGCGCCGCa- -3'
miRNA:   3'- -GGCAGCuguaGCCAU-GGCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 8066 0.71 0.562213
Target:  5'- gCCGcCGACAUCGagaucGUGCCGCGCUg--- -3'
miRNA:   3'- -GGCaGCUGUAGC-----CAUGGCGUGGugag -5'
23511 3' -54.8 NC_005259.1 + 8129 0.67 0.782041
Target:  5'- -aGUCGGCuacgGGUGCCccGCGCC-CUCg -3'
miRNA:   3'- ggCAGCUGuag-CCAUGG--CGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 8379 0.67 0.783008
Target:  5'- gCC-UCGGCAUCGGcgagagccucggcgaGCCGgGCCACcUCg -3'
miRNA:   3'- -GGcAGCUGUAGCCa--------------UGGCgUGGUG-AG- -5'
23511 3' -54.8 NC_005259.1 + 9272 0.68 0.73202
Target:  5'- cCCGaaaCGGCGaguuaugCGGUGCCGC-CaCGCUCg -3'
miRNA:   3'- -GGCa--GCUGUa------GCCAUGGCGuG-GUGAG- -5'
23511 3' -54.8 NC_005259.1 + 9614 0.69 0.668973
Target:  5'- aCCGU-GGCAUCGaacACCGCGCCGgugccCUCg -3'
miRNA:   3'- -GGCAgCUGUAGCca-UGGCGUGGU-----GAG- -5'
23511 3' -54.8 NC_005259.1 + 11137 0.67 0.752388
Target:  5'- gCCGUCGccugcggguaACAcuUCGGUGCgGCAgUGCUUg -3'
miRNA:   3'- -GGCAGC----------UGU--AGCCAUGgCGUgGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 11976 0.66 0.82838
Target:  5'- cCCGgCGAC--UGGUAUCGCugCAC-Ca -3'
miRNA:   3'- -GGCaGCUGuaGCCAUGGCGugGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 13454 0.68 0.711272
Target:  5'- aCCGUCGGCGcggcgcUGGUgcucACCGCGCUGCcCg -3'
miRNA:   3'- -GGCAGCUGUa-----GCCA----UGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 16453 0.91 0.031976
Target:  5'- aCCGUCGGCAUCGGUACCcCGCCGCa- -3'
miRNA:   3'- -GGCAGCUGUAGCCAUGGcGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 17352 0.71 0.541248
Target:  5'- gCCGUCGAgGUCGGcgGCUcgGCGCUGgUCg -3'
miRNA:   3'- -GGCAGCUgUAGCCa-UGG--CGUGGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 18782 0.68 0.73202
Target:  5'- gCgGUgGGCAagCGGUggcagggacGCCGCACC-CUCa -3'
miRNA:   3'- -GgCAgCUGUa-GCCA---------UGGCGUGGuGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.