miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 3' -54.8 NC_005259.1 + 41320 0.66 0.843924
Target:  5'- -gGUCGACcucgaaaagggCGGUGCCGUcggauACCACg- -3'
miRNA:   3'- ggCAGCUGua---------GCCAUGGCG-----UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 65998 0.71 0.551701
Target:  5'- gCCGcUCGACGU-GGUG-CGCACC-CUCg -3'
miRNA:   3'- -GGC-AGCUGUAgCCAUgGCGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 8066 0.71 0.562213
Target:  5'- gCCGcCGACAUCGagaucGUGCCGCGCUg--- -3'
miRNA:   3'- -GGCaGCUGUAGC-----CAUGGCGUGGugag -5'
23511 3' -54.8 NC_005259.1 + 27662 0.7 0.583392
Target:  5'- gUGUCGACAUCGagccauuuGUugCGCgACCACg- -3'
miRNA:   3'- gGCAGCUGUAGC--------CAugGCG-UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 3128 0.7 0.583392
Target:  5'- aCCGUgGGCAgCGG-ACgGCACCGCcCg -3'
miRNA:   3'- -GGCAgCUGUaGCCaUGgCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 37035 0.7 0.583392
Target:  5'- aUGUCGAUcUUGGUGCC-CGCCAC-Cg -3'
miRNA:   3'- gGCAGCUGuAGCCAUGGcGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 46573 0.7 0.604724
Target:  5'- gUCG-CGGCGUCG--ACCGCGCCGCcCg -3'
miRNA:   3'- -GGCaGCUGUAGCcaUGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 59139 0.7 0.615427
Target:  5'- gUCGagcUCGGCAgCGGUGCCGgggaGCUGCUCa -3'
miRNA:   3'- -GGC---AGCUGUaGCCAUGGCg---UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 47944 0.7 0.626145
Target:  5'- gCCGaUGACggCGGUgccgauggccGCCGCGCCGCcCg -3'
miRNA:   3'- -GGCaGCUGuaGCCA----------UGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 56077 0.71 0.541248
Target:  5'- aCCGUCGAgCAgaUCGGUGCuCGUcgggGCCAC-Cg -3'
miRNA:   3'- -GGCAGCU-GU--AGCCAUG-GCG----UGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 17352 0.71 0.541248
Target:  5'- gCCGUCGAgGUCGGcgGCUcgGCGCUGgUCg -3'
miRNA:   3'- -GGCAGCUgUAGCCa-UGG--CGUGGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 40148 0.72 0.500171
Target:  5'- gCCGUCGguuGUCGGUGCC-CGCCccggcaGCUCg -3'
miRNA:   3'- -GGCAGCug-UAGCCAUGGcGUGG------UGAG- -5'
23511 3' -54.8 NC_005259.1 + 67856 0.79 0.194358
Target:  5'- -gGUCGACcaAUCGGUGCCGUAggucucgauCCACUCg -3'
miRNA:   3'- ggCAGCUG--UAGCCAUGGCGU---------GGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 53624 0.75 0.336598
Target:  5'- gCGUCGAg--CGGUGCCGUugGCCGCUUc -3'
miRNA:   3'- gGCAGCUguaGCCAUGGCG--UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 3173 0.75 0.344602
Target:  5'- cCCGgCGAugucaagguCGUCGGUGCgCGCACCACg- -3'
miRNA:   3'- -GGCaGCU---------GUAGCCAUG-GCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 7424 0.74 0.369424
Target:  5'- gCCGUCGg---CGGUGcCCGCGCCGCa- -3'
miRNA:   3'- -GGCAGCuguaGCCAU-GGCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 24053 0.74 0.395443
Target:  5'- gUCGUCGGCG-CGGUGCUcaaucucguGCACCGCg- -3'
miRNA:   3'- -GGCAGCUGUaGCCAUGG---------CGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 28963 0.74 0.395443
Target:  5'- aUCGcCGAgGUCGGUGCCGagGCCGCg- -3'
miRNA:   3'- -GGCaGCUgUAGCCAUGGCg-UGGUGag -5'
23511 3' -54.8 NC_005259.1 + 23474 0.73 0.43192
Target:  5'- gCC-UCGGCAuugUCGGUGCCGaCGCCAUg- -3'
miRNA:   3'- -GGcAGCUGU---AGCCAUGGC-GUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 45004 0.72 0.480151
Target:  5'- aCCGcCGACcgcCGGgGCCGCGCCGCc- -3'
miRNA:   3'- -GGCaGCUGua-GCCaUGGCGUGGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.