miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 3' -54.8 NC_005259.1 + 68546 0.66 0.810367
Target:  5'- gCGUCGACAUCGGggugGuuGaGCCAaccgagguggacCUCg -3'
miRNA:   3'- gGCAGCUGUAGCCa---UggCgUGGU------------GAG- -5'
23511 3' -54.8 NC_005259.1 + 67856 0.79 0.194358
Target:  5'- -gGUCGACcaAUCGGUGCCGUAggucucgauCCACUCg -3'
miRNA:   3'- ggCAGCUG--UAGCCAUGGCGU---------GGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 66863 0.66 0.801089
Target:  5'- aCCGaUCGGCcuuguUCGc-ACCGCGCCACg- -3'
miRNA:   3'- -GGC-AGCUGu----AGCcaUGGCGUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 65998 0.71 0.551701
Target:  5'- gCCGcUCGACGU-GGUG-CGCACC-CUCg -3'
miRNA:   3'- -GGC-AGCUGUAgCCAUgGCGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 63119 0.66 0.837097
Target:  5'- gCCGUCGAgGgUGGUgaggucguaGCCGCugUcCUCg -3'
miRNA:   3'- -GGCAGCUgUaGCCA---------UGGCGugGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 61922 0.68 0.72065
Target:  5'- gUCGUCGGCAgcUCGGUcucucgcgcggguGCCGgggcCACCGCa- -3'
miRNA:   3'- -GGCAGCUGU--AGCCA-------------UGGC----GUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 61007 0.67 0.790691
Target:  5'- cCCGUCGACGgugagcuuccacUCGGUggcggcgaggucgACCGacggGCgGCUCa -3'
miRNA:   3'- -GGCAGCUGU------------AGCCA-------------UGGCg---UGgUGAG- -5'
23511 3' -54.8 NC_005259.1 + 60552 0.69 0.679622
Target:  5'- cUCGUCGGCAUgccCGGUGCCGa--CGgUCa -3'
miRNA:   3'- -GGCAGCUGUA---GCCAUGGCgugGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 59139 0.7 0.615427
Target:  5'- gUCGagcUCGGCAgCGGUGCCGgggaGCUGCUCa -3'
miRNA:   3'- -GGC---AGCUGUaGCCAUGGCg---UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 56249 0.66 0.801089
Target:  5'- aCGUUGGgAUCGGcgGCCuugaGCGCCGC-Cg -3'
miRNA:   3'- gGCAGCUgUAGCCa-UGG----CGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 56077 0.71 0.541248
Target:  5'- aCCGUCGAgCAgaUCGGUGCuCGUcgggGCCAC-Cg -3'
miRNA:   3'- -GGCAGCU-GU--AGCCAUG-GCG----UGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 53699 0.68 0.73202
Target:  5'- aCCGgucaaCGugAacgUGGUcACCGCGCCGCUg -3'
miRNA:   3'- -GGCa----GCugUa--GCCA-UGGCGUGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 53624 0.75 0.336598
Target:  5'- gCGUCGAg--CGGUGCCGUugGCCGCUUc -3'
miRNA:   3'- gGCAGCUguaGCCAUGGCG--UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 50673 0.68 0.742256
Target:  5'- aCCaG-CG-CGUCGGUGCCgacgagGCGCUGCUCg -3'
miRNA:   3'- -GG-CaGCuGUAGCCAUGG------CGUGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 50500 0.67 0.771308
Target:  5'- gCCgGUCGAUGUgggCGGUgcGCUGCACCucgacgcGCUCg -3'
miRNA:   3'- -GG-CAGCUGUA---GCCA--UGGCGUGG-------UGAG- -5'
23511 3' -54.8 NC_005259.1 + 50276 0.66 0.82838
Target:  5'- gUCGUCGguggcgggaACGUC-GUGCaCGCucuGCCACUCg -3'
miRNA:   3'- -GGCAGC---------UGUAGcCAUG-GCG---UGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 48950 0.68 0.721688
Target:  5'- aCCGUCGguuACAUCGGcaacgcCCGCAUgGgUCg -3'
miRNA:   3'- -GGCAGC---UGUAGCCau----GGCGUGgUgAG- -5'
23511 3' -54.8 NC_005259.1 + 47944 0.7 0.626145
Target:  5'- gCCGaUGACggCGGUgccgauggccGCCGCGCCGCcCg -3'
miRNA:   3'- -GGCaGCUGuaGCCA----------UGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 46573 0.7 0.604724
Target:  5'- gUCG-CGGCGUCG--ACCGCGCCGCcCg -3'
miRNA:   3'- -GGCaGCUGUAGCcaUGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 45667 0.69 0.658291
Target:  5'- gCCGUCcGCGUa-GUACCGC-CUGCUCa -3'
miRNA:   3'- -GGCAGcUGUAgcCAUGGCGuGGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.