miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23511 3' -54.8 NC_005259.1 + 50500 0.67 0.771308
Target:  5'- gCCgGUCGAUGUgggCGGUgcGCUGCACCucgacgcGCUCg -3'
miRNA:   3'- -GG-CAGCUGUA---GCCA--UGGCGUGG-------UGAG- -5'
23511 3' -54.8 NC_005259.1 + 8129 0.67 0.782041
Target:  5'- -aGUCGGCuacgGGUGCCccGCGCC-CUCg -3'
miRNA:   3'- ggCAGCUGuag-CCAUGG--CGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 61007 0.67 0.790691
Target:  5'- cCCGUCGACGgugagcuuccacUCGGUggcggcgaggucgACCGacggGCgGCUCa -3'
miRNA:   3'- -GGCAGCUGU------------AGCCA-------------UGGCg---UGgUGAG- -5'
23511 3' -54.8 NC_005259.1 + 61922 0.68 0.72065
Target:  5'- gUCGUCGGCAgcUCGGUcucucgcgcggguGCCGgggcCACCGCa- -3'
miRNA:   3'- -GGCAGCUGU--AGCCA-------------UGGC----GUGGUGag -5'
23511 3' -54.8 NC_005259.1 + 48950 0.68 0.721688
Target:  5'- aCCGUCGguuACAUCGGcaacgcCCGCAUgGgUCg -3'
miRNA:   3'- -GGCAGC---UGUAGCCau----GGCGUGgUgAG- -5'
23511 3' -54.8 NC_005259.1 + 18782 0.68 0.73202
Target:  5'- gCgGUgGGCAagCGGUggcagggacGCCGCACC-CUCa -3'
miRNA:   3'- -GgCAgCUGUa-GCCA---------UGGCGUGGuGAG- -5'
23511 3' -54.8 NC_005259.1 + 35623 0.68 0.73202
Target:  5'- gCGUCGAguaguUCGG-GCCGCcGCCGCUg -3'
miRNA:   3'- gGCAGCUgu---AGCCaUGGCG-UGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 53699 0.68 0.73202
Target:  5'- aCCGgucaaCGugAacgUGGUcACCGCGCCGCUg -3'
miRNA:   3'- -GGCa----GCugUa--GCCA-UGGCGUGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 9272 0.68 0.73202
Target:  5'- cCCGaaaCGGCGaguuaugCGGUGCCGC-CaCGCUCg -3'
miRNA:   3'- -GGCa--GCUGUa------GCCAUGGCGuG-GUGAG- -5'
23511 3' -54.8 NC_005259.1 + 50673 0.68 0.742256
Target:  5'- aCCaG-CG-CGUCGGUGCCgacgagGCGCUGCUCg -3'
miRNA:   3'- -GG-CaGCuGUAGCCAUGG------CGUGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 6446 0.68 0.73202
Target:  5'- aCCGUCGcgcugaucggcaGCGUcgcCGGUGCCcuGUACCcGCUCa -3'
miRNA:   3'- -GGCAGC------------UGUA---GCCAUGG--CGUGG-UGAG- -5'
23511 3' -54.8 NC_005259.1 + 39474 0.68 0.715448
Target:  5'- gCCGUCgucgcgguagcacgaGAUAUCGaGcuugaugGCCGCGCCGCUg -3'
miRNA:   3'- -GGCAG---------------CUGUAGC-Ca------UGGCGUGGUGAg -5'
23511 3' -54.8 NC_005259.1 + 13454 0.68 0.711272
Target:  5'- aCCGUCGGCGcggcgcUGGUgcucACCGCGCUGCcCg -3'
miRNA:   3'- -GGCAGCUGUa-----GCCA----UGGCGUGGUGaG- -5'
23511 3' -54.8 NC_005259.1 + 1430 0.68 0.711272
Target:  5'- aCGUCGuGC-UCGGgcUgGCACUGCUCg -3'
miRNA:   3'- gGCAGC-UGuAGCCauGgCGUGGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 26996 0.68 0.710226
Target:  5'- aCGuUCGACGuuUCGGUcuugaacGCCGCGCCguaGCUg -3'
miRNA:   3'- gGC-AGCUGU--AGCCA-------UGGCGUGG---UGAg -5'
23511 3' -54.8 NC_005259.1 + 5905 0.68 0.700782
Target:  5'- aCGUCGAgGUCgaGGUGCugCGCACCG-UCg -3'
miRNA:   3'- gGCAGCUgUAG--CCAUG--GCGUGGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 34865 0.68 0.711272
Target:  5'- gUGUCcuCGUCGGUGCCGgACCGgggugcCUCg -3'
miRNA:   3'- gGCAGcuGUAGCCAUGGCgUGGU------GAG- -5'
23511 3' -54.8 NC_005259.1 + 60552 0.69 0.679622
Target:  5'- cUCGUCGGCAUgccCGGUGCCGa--CGgUCa -3'
miRNA:   3'- -GGCAGCUGUA---GCCAUGGCgugGUgAG- -5'
23511 3' -54.8 NC_005259.1 + 38164 0.69 0.668973
Target:  5'- gCCGaUGACGgugaUCGGUGCCucgucGCugUACUCg -3'
miRNA:   3'- -GGCaGCUGU----AGCCAUGG-----CGugGUGAG- -5'
23511 3' -54.8 NC_005259.1 + 20479 0.69 0.668973
Target:  5'- gCCGUCGACcUCGacACCGC-CCggcaGCUCa -3'
miRNA:   3'- -GGCAGCUGuAGCcaUGGCGuGG----UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.