miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23512 5' -57.7 NC_005259.1 + 20519 0.66 0.641181
Target:  5'- -gUGuCCCgagcacggGUGCGCUGCCCGCagCGUg -3'
miRNA:   3'- gaACcGGG--------UAUGCGACGGGUGa-GCGu -5'
23512 5' -57.7 NC_005259.1 + 1677 0.68 0.513643
Target:  5'- --aGGUCCGaucUGCGC-GCCCGCaagCGCGa -3'
miRNA:   3'- gaaCCGGGU---AUGCGaCGGGUGa--GCGU- -5'
23512 5' -57.7 NC_005259.1 + 50510 0.67 0.522932
Target:  5'- -gUGGgCgGUGCGCUGCaCCucgacgcGCUCGCc -3'
miRNA:   3'- gaACCgGgUAUGCGACG-GG-------UGAGCGu -5'
23512 5' -57.7 NC_005259.1 + 54393 0.67 0.523968
Target:  5'- gCUUGGCCUGUuccuCGCgGauuuugucgauaUCCGCUCGCAg -3'
miRNA:   3'- -GAACCGGGUAu---GCGaC------------GGGUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 30573 0.67 0.52812
Target:  5'- cCUUGGCCgCAguaGCGCUguuguccucccacacGCCCACggucUCGCc -3'
miRNA:   3'- -GAACCGG-GUa--UGCGA---------------CGGGUG----AGCGu -5'
23512 5' -57.7 NC_005259.1 + 22847 0.67 0.534371
Target:  5'- --cGGCCCAccCGCaGCCgcaaccugUACUCGCAg -3'
miRNA:   3'- gaaCCGGGUauGCGaCGG--------GUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 41386 0.67 0.543796
Target:  5'- gCUUGGCCgGUacccaugGCGCgccgcucggggUGCCCACgaugUGCAc -3'
miRNA:   3'- -GAACCGGgUA-------UGCG-----------ACGGGUGa---GCGU- -5'
23512 5' -57.7 NC_005259.1 + 63790 0.67 0.544846
Target:  5'- aCUUGGCCgCGUucuugaucuuGCGUgugGUCCGCUCGa- -3'
miRNA:   3'- -GAACCGG-GUA----------UGCGa--CGGGUGAGCgu -5'
23512 5' -57.7 NC_005259.1 + 27732 0.67 0.555387
Target:  5'- aCUUGuucgcGCCCGc-UGCUGCCCACggUGCAu -3'
miRNA:   3'- -GAAC-----CGGGUauGCGACGGGUGa-GCGU- -5'
23512 5' -57.7 NC_005259.1 + 32300 0.68 0.511588
Target:  5'- cCUUGGCCCAgagccuugagcCGCagUGCCCGCcaauugugCGCGg -3'
miRNA:   3'- -GAACCGGGUau---------GCG--ACGGGUGa-------GCGU- -5'
23512 5' -57.7 NC_005259.1 + 24849 0.68 0.503402
Target:  5'- ---aGUCCGUGCGCUacgccgagGCCCGcCUCGCu -3'
miRNA:   3'- gaacCGGGUAUGCGA--------CGGGU-GAGCGu -5'
23512 5' -57.7 NC_005259.1 + 10133 0.68 0.483196
Target:  5'- ---aGCCCAcGCGCgcGCCCGCcguUCGCAc -3'
miRNA:   3'- gaacCGGGUaUGCGa-CGGGUG---AGCGU- -5'
23512 5' -57.7 NC_005259.1 + 7689 0.76 0.157373
Target:  5'- -gUGGCCCGUACGuCUGCaCCACcaUCGUc -3'
miRNA:   3'- gaACCGGGUAUGC-GACG-GGUG--AGCGu -5'
23512 5' -57.7 NC_005259.1 + 62005 0.74 0.221763
Target:  5'- --gGGCaCCGUGCGgUGuaCCCGCUCGCGc -3'
miRNA:   3'- gaaCCG-GGUAUGCgAC--GGGUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 37456 0.73 0.239507
Target:  5'- aUUGGCCCgAUugGCUGgCCACgcCGCc -3'
miRNA:   3'- gAACCGGG-UAugCGACgGGUGa-GCGu -5'
23512 5' -57.7 NC_005259.1 + 60733 0.71 0.314805
Target:  5'- --cGGCCCGUGuCGggGUCCAUUUGCAg -3'
miRNA:   3'- gaaCCGGGUAU-GCgaCGGGUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 29936 0.7 0.380005
Target:  5'- -gUGGCCgccACGCgGCCCGgUCGCGg -3'
miRNA:   3'- gaACCGGguaUGCGaCGGGUgAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 24332 0.69 0.453644
Target:  5'- --cGGCCuCAcGCGCUgGCCUaccgccggguGCUCGCAc -3'
miRNA:   3'- gaaCCGG-GUaUGCGA-CGGG----------UGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 61187 0.69 0.453644
Target:  5'- -aUGGCCCu--CGCcgGUCUGCUUGCAc -3'
miRNA:   3'- gaACCGGGuauGCGa-CGGGUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 49658 0.68 0.473239
Target:  5'- --cGGCCUcgAUACGC-GCCUGCUCGg- -3'
miRNA:   3'- gaaCCGGG--UAUGCGaCGGGUGAGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.