miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23513 5' -58.5 NC_005259.1 + 36145 0.66 0.660704
Target:  5'- gCUGUCCGuCGC-CAUgGCCacgGUGACGAc -3'
miRNA:   3'- -GGCAGGCcGCGaGUAgUGG---CGCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 24053 0.68 0.526631
Target:  5'- gUCGUCggcgCGGUGCUCAaucucgugCACCGCGA-GAu -3'
miRNA:   3'- -GGCAG----GCCGCGAGUa-------GUGGCGCUgCU- -5'
23513 5' -58.5 NC_005259.1 + 17352 0.68 0.534677
Target:  5'- gCCGUCgaggucggcggcuCGGCGCUgGUCguggucgACUGCGACa- -3'
miRNA:   3'- -GGCAG-------------GCCGCGAgUAG-------UGGCGCUGcu -5'
23513 5' -58.5 NC_005259.1 + 9503 0.68 0.536696
Target:  5'- -aGgaaCGuGCGCUCGUCGCgCGCGuCGAc -3'
miRNA:   3'- ggCag-GC-CGCGAGUAGUG-GCGCuGCU- -5'
23513 5' -58.5 NC_005259.1 + 45518 0.68 0.546826
Target:  5'- aCCGcgCCGGUGUUgGcCGCCGUGGCu- -3'
miRNA:   3'- -GGCa-GGCCGCGAgUaGUGGCGCUGcu -5'
23513 5' -58.5 NC_005259.1 + 56566 0.68 0.557016
Target:  5'- -gGUUCGGUGaUCGUCgcgGCUGCGAUGAg -3'
miRNA:   3'- ggCAGGCCGCgAGUAG---UGGCGCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 49609 0.67 0.56726
Target:  5'- aCC-UCgGGCaGCUCAUCAUCGUcaucGGCGGc -3'
miRNA:   3'- -GGcAGgCCG-CGAGUAGUGGCG----CUGCU- -5'
23513 5' -58.5 NC_005259.1 + 23309 0.67 0.56726
Target:  5'- -gGUCCGGCGCggucggUGUCGCCGaGcCGGa -3'
miRNA:   3'- ggCAGGCCGCGa-----GUAGUGGCgCuGCU- -5'
23513 5' -58.5 NC_005259.1 + 14723 0.67 0.56726
Target:  5'- aCG-CC-GCGCUCGUCGCCGaGAUGu -3'
miRNA:   3'- gGCaGGcCGCGAGUAGUGGCgCUGCu -5'
23513 5' -58.5 NC_005259.1 + 18326 0.68 0.516638
Target:  5'- aCCGaggCCGGUGCguUCGUggucgaCGCCGaCGGCGAc -3'
miRNA:   3'- -GGCa--GGCCGCG--AGUA------GUGGC-GCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 51113 0.68 0.516638
Target:  5'- uCUGUCCGGCagGCcaUCAgaUCACCGUcggGGCGGc -3'
miRNA:   3'- -GGCAGGCCG--CG--AGU--AGUGGCG---CUGCU- -5'
23513 5' -58.5 NC_005259.1 + 28751 0.69 0.496889
Target:  5'- gCGcCCGaGCGUgagaUCGUCGCCGgugcCGACGAg -3'
miRNA:   3'- gGCaGGC-CGCG----AGUAGUGGC----GCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 61746 0.75 0.208711
Target:  5'- gCGUCCGGCGag-AUCugUGCGGCGGc -3'
miRNA:   3'- gGCAGGCCGCgagUAGugGCGCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 56077 0.74 0.248315
Target:  5'- aCCGUCgagcagauCGGUGCUCGUCggggccACCGCGugGc -3'
miRNA:   3'- -GGCAG--------GCCGCGAGUAG------UGGCGCugCu -5'
23513 5' -58.5 NC_005259.1 + 58970 0.73 0.293933
Target:  5'- -gGUCgGGCaGCUCGUCGgCGaCGGCGAg -3'
miRNA:   3'- ggCAGgCCG-CGAGUAGUgGC-GCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 13454 0.72 0.307393
Target:  5'- aCCGUCggcgCGGCGCUgGugcUCACCGCgcugcccGACGAu -3'
miRNA:   3'- -GGCAG----GCCGCGAgU---AGUGGCG-------CUGCU- -5'
23513 5' -58.5 NC_005259.1 + 752 0.71 0.353758
Target:  5'- gCCG-CCGGUGCcuaccgCGUcCACCGCGcCGAg -3'
miRNA:   3'- -GGCaGGCCGCGa-----GUA-GUGGCGCuGCU- -5'
23513 5' -58.5 NC_005259.1 + 7404 0.71 0.38674
Target:  5'- cCCGcaaCGGCaucCUCGUCGCCGuCGGCGGu -3'
miRNA:   3'- -GGCag-GCCGc--GAGUAGUGGC-GCUGCU- -5'
23513 5' -58.5 NC_005259.1 + 19078 0.7 0.430715
Target:  5'- gCgGUCCGGCGCUacgacaaGCUGCG-CGAa -3'
miRNA:   3'- -GgCAGGCCGCGAguag---UGGCGCuGCU- -5'
23513 5' -58.5 NC_005259.1 + 4331 0.69 0.487142
Target:  5'- cUCGUgCCGGaC-CUCGUCGCgGUGAUGAg -3'
miRNA:   3'- -GGCA-GGCC-GcGAGUAGUGgCGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.