miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23514 3' -54.3 NC_005259.1 + 47793 0.66 0.851648
Target:  5'- cGCAGCGguccGACggugaGUCGcgaGACC-UCGCGg -3'
miRNA:   3'- -CGUCGCa---CUGg----UAGCa--CUGGuAGCGC- -5'
23514 3' -54.3 NC_005259.1 + 36436 0.66 0.851648
Target:  5'- cGCAGCGUcGCCGagGUcGACCG-CGuCGa -3'
miRNA:   3'- -CGUCGCAcUGGUagCA-CUGGUaGC-GC- -5'
23514 3' -54.3 NC_005259.1 + 11072 0.66 0.843205
Target:  5'- uCAGCGUGgaaGCCGUaCGgcucGACC-UCGCa -3'
miRNA:   3'- cGUCGCAC---UGGUA-GCa---CUGGuAGCGc -5'
23514 3' -54.3 NC_005259.1 + 36775 0.66 0.843205
Target:  5'- gGC-GCGUugccGCCGUCcUGACCGcUCGCGu -3'
miRNA:   3'- -CGuCGCAc---UGGUAGcACUGGU-AGCGC- -5'
23514 3' -54.3 NC_005259.1 + 1951 0.66 0.834547
Target:  5'- cCGGCGUGAgCguuGUCGUGACguUCcgGCGc -3'
miRNA:   3'- cGUCGCACUgG---UAGCACUGguAG--CGC- -5'
23514 3' -54.3 NC_005259.1 + 13447 0.66 0.816621
Target:  5'- -aGGCGUGACCGUCGg------CGCGg -3'
miRNA:   3'- cgUCGCACUGGUAGCacugguaGCGC- -5'
23514 3' -54.3 NC_005259.1 + 3097 0.67 0.807372
Target:  5'- cGCAGCGaUGAgCGg-GcGGCCAUUGCGc -3'
miRNA:   3'- -CGUCGC-ACUgGUagCaCUGGUAGCGC- -5'
23514 3' -54.3 NC_005259.1 + 21025 0.67 0.807372
Target:  5'- gGCAGC-UGACCGa--UGACCGgcgCGCGu -3'
miRNA:   3'- -CGUCGcACUGGUagcACUGGUa--GCGC- -5'
23514 3' -54.3 NC_005259.1 + 14566 0.67 0.807372
Target:  5'- -gAGCGggGACCggCGaacACCAUCGCGc -3'
miRNA:   3'- cgUCGCa-CUGGuaGCac-UGGUAGCGC- -5'
23514 3' -54.3 NC_005259.1 + 29454 0.67 0.796039
Target:  5'- cCAGCGUGACCuugccgcccggcUCGgcaugGACCGcCGUGa -3'
miRNA:   3'- cGUCGCACUGGu-----------AGCa----CUGGUaGCGC- -5'
23514 3' -54.3 NC_005259.1 + 15566 0.67 0.778599
Target:  5'- uCAG-GUGGCCAcccUCGgGGCCAgCGCGa -3'
miRNA:   3'- cGUCgCACUGGU---AGCaCUGGUaGCGC- -5'
23514 3' -54.3 NC_005259.1 + 28314 0.67 0.7687
Target:  5'- cGCAGCGUaGAUCggUGUG-CCGUCcuugGCGg -3'
miRNA:   3'- -CGUCGCA-CUGGuaGCACuGGUAG----CGC- -5'
23514 3' -54.3 NC_005259.1 + 58334 0.67 0.7687
Target:  5'- gGCAGCGagaucaggucggUGGCC-UCG-GGCaCGUCGCa -3'
miRNA:   3'- -CGUCGC------------ACUGGuAGCaCUG-GUAGCGc -5'
23514 3' -54.3 NC_005259.1 + 29933 0.68 0.73823
Target:  5'- --cGCGUGGCCGccaCGcGGCCcgGUCGCGg -3'
miRNA:   3'- cguCGCACUGGUa--GCaCUGG--UAGCGC- -5'
23514 3' -54.3 NC_005259.1 + 4318 0.68 0.727852
Target:  5'- -gAGCGcGACCAaccUCGUgccgGACCucGUCGCGg -3'
miRNA:   3'- cgUCGCaCUGGU---AGCA----CUGG--UAGCGC- -5'
23514 3' -54.3 NC_005259.1 + 67980 0.69 0.696205
Target:  5'- aGCGGCGUGGCCAccgcCGcGAgCGUCGa- -3'
miRNA:   3'- -CGUCGCACUGGUa---GCaCUgGUAGCgc -5'
23514 3' -54.3 NC_005259.1 + 58465 0.69 0.685522
Target:  5'- cGCGGCc--ACCAgugCGUGGCUGUCGCc -3'
miRNA:   3'- -CGUCGcacUGGUa--GCACUGGUAGCGc -5'
23514 3' -54.3 NC_005259.1 + 46292 0.7 0.631569
Target:  5'- aCAGCGgGGCCGcCGUGGCUGcguuguUCGCGg -3'
miRNA:   3'- cGUCGCaCUGGUaGCACUGGU------AGCGC- -5'
23514 3' -54.3 NC_005259.1 + 56901 0.71 0.577614
Target:  5'- cGCAGCGUGGCCGccgcagcaggCGUG-CCcgCGuCGg -3'
miRNA:   3'- -CGUCGCACUGGUa---------GCACuGGuaGC-GC- -5'
23514 3' -54.3 NC_005259.1 + 9834 0.72 0.514364
Target:  5'- uGCGGCGcUGGCCcaAUCGacauUGACCAgaCGCGg -3'
miRNA:   3'- -CGUCGC-ACUGG--UAGC----ACUGGUa-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.