Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 33384 | 0.67 | 0.690627 |
Target: 5'- cCGGUccGCcGAGCGCGaCGAGCcGUGUCc -3' miRNA: 3'- cGUCA--CGcUUCGUGC-GCUCGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 60578 | 0.67 | 0.701306 |
Target: 5'- uCAG-GCGGccCACgGCGAGUcgGGUGCCg -3' miRNA: 3'- cGUCaCGCUucGUG-CGCUCG--UCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 33093 | 0.67 | 0.701306 |
Target: 5'- uGUAG-GU-AGGCcCGCGAGC-GUGCCu -3' miRNA: 3'- -CGUCaCGcUUCGuGCGCUCGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 44957 | 0.67 | 0.701306 |
Target: 5'- gGCAGUGCGGucaucGGgAUGCcgaGGGCcGGUGCg -3' miRNA: 3'- -CGUCACGCU-----UCgUGCG---CUCG-UCACGg -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 57886 | 0.67 | 0.673432 |
Target: 5'- gGCGGUGCGcgacagaccccgcuuGAGaCGgauguugguCGCGAcCAGUGCCa -3' miRNA: 3'- -CGUCACGC---------------UUC-GU---------GCGCUcGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 36044 | 0.67 | 0.658305 |
Target: 5'- ----aGCGAGGCcacccGCGCGAGCAccaccugcuguGUGCUc -3' miRNA: 3'- cgucaCGCUUCG-----UGCGCUCGU-----------CACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 21176 | 0.67 | 0.701306 |
Target: 5'- gGCAGU-CG-GGUcaucgGCGCGAGCaccaagcugcaaGGUGCCg -3' miRNA: 3'- -CGUCAcGCuUCG-----UGCGCUCG------------UCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 26829 | 0.68 | 0.64747 |
Target: 5'- gGUGGUGcCGggGCggucuGCuCGGGCAGgaUGCCg -3' miRNA: 3'- -CGUCAC-GCuuCG-----UGcGCUCGUC--ACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 199 | 0.68 | 0.635537 |
Target: 5'- -uGGcGCGuGGCGCGacggcaagcaguuCGGGCAGUGCUa -3' miRNA: 3'- cgUCaCGCuUCGUGC-------------GCUCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 51667 | 0.68 | 0.614922 |
Target: 5'- cGCGG-GCGcgucgggcacGGGCGCGCGAugGUcucauaGGUGCCg -3' miRNA: 3'- -CGUCaCGC----------UUCGUGCGCU--CG------UCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 56180 | 0.68 | 0.614922 |
Target: 5'- aCGGUGcCGAcauacGCguuGCGCGAGCuGUGCUc -3' miRNA: 3'- cGUCAC-GCUu----CG---UGCGCUCGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 26512 | 0.68 | 0.614922 |
Target: 5'- cGCccgGCGAgaagAGCGCgGUGAGCAGcuugGCCa -3' miRNA: 3'- -CGucaCGCU----UCGUG-CGCUCGUCa---CGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 57454 | 0.68 | 0.60409 |
Target: 5'- -uGGUGCGAcGC-UGCG-GCAG-GCCg -3' miRNA: 3'- cgUCACGCUuCGuGCGCuCGUCaCGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 59131 | 0.69 | 0.550445 |
Target: 5'- aGCAGaGCGucGAGCucgGC-AGCGGUGCCg -3' miRNA: 3'- -CGUCaCGC--UUCGug-CGcUCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 66107 | 0.69 | 0.550445 |
Target: 5'- cGCAcGcGCGAcuucuacGCGCGuCGAGCAG-GCCa -3' miRNA: 3'- -CGU-CaCGCUu------CGUGC-GCUCGUCaCGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 59385 | 0.69 | 0.571767 |
Target: 5'- cGCAccGUGCcuccGCGCGCGAGC-GUGaCCu -3' miRNA: 3'- -CGU--CACGcuu-CGUGCGCUCGuCAC-GG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 53605 | 0.69 | 0.561078 |
Target: 5'- uGCucGU-CGggGUcagcagGCGuCGAGCGGUGCCg -3' miRNA: 3'- -CGu-CAcGCuuCG------UGC-GCUCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 26417 | 0.7 | 0.507575 |
Target: 5'- gGCGGUGCcgccguaGAAcGCAcCGcCGAGCGGgcggGCCg -3' miRNA: 3'- -CGUCACG-------CUU-CGU-GC-GCUCGUCa---CGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 14513 | 0.7 | 0.508604 |
Target: 5'- uGCAcaccgGCG-AGCACGCGGuGCguuucGGUGCCg -3' miRNA: 3'- -CGUca---CGCuUCGUGCGCU-CG-----UCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 36533 | 0.7 | 0.508604 |
Target: 5'- cGCGGUGUGA--CACGCGGGguGaucUGCg -3' miRNA: 3'- -CGUCACGCUucGUGCGCUCguC---ACGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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