Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23516 | 5' | -55.6 | NC_005259.1 | + | 32519 | 0.67 | 0.669116 |
Target: 5'- gGUAGU-CGAGGCGgGCG-GCAG-GCUu -3' miRNA: 3'- -CGUCAcGCUUCGUgCGCuCGUCaCGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 33093 | 0.67 | 0.701306 |
Target: 5'- uGUAG-GU-AGGCcCGCGAGC-GUGCCu -3' miRNA: 3'- -CGUCaCGcUUCGuGCGCUCGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 33384 | 0.67 | 0.690627 |
Target: 5'- cCGGUccGCcGAGCGCGaCGAGCcGUGUCc -3' miRNA: 3'- cGUCA--CGcUUCGUGC-GCUCGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 35672 | 0.71 | 0.468164 |
Target: 5'- cGCGGUGgUGguGCACaGCGAcGCcGUGCCc -3' miRNA: 3'- -CGUCAC-GCuuCGUG-CGCU-CGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 36044 | 0.67 | 0.658305 |
Target: 5'- ----aGCGAGGCcacccGCGCGAGCAccaccugcuguGUGCUc -3' miRNA: 3'- cgucaCGCUUCG-----UGCGCUCGU-----------CACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 36533 | 0.7 | 0.508604 |
Target: 5'- cGCGGUGUGA--CACGCGGGguGaucUGCg -3' miRNA: 3'- -CGUCACGCUucGUGCGCUCguC---ACGg -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 37976 | 0.73 | 0.366465 |
Target: 5'- gGCAGUGCGucGUACuGCGccuGC-GUGCCc -3' miRNA: 3'- -CGUCACGCuuCGUG-CGCu--CGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 41312 | 0.67 | 0.679894 |
Target: 5'- -gAGcGCGAGGUcgaccuCGaaaaGGGCGGUGCCg -3' miRNA: 3'- cgUCaCGCUUCGu-----GCg---CUCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 41897 | 0.66 | 0.76362 |
Target: 5'- cGCA-UGCGGgaugAGCGCGgGAGCucgaaGGUGaCCc -3' miRNA: 3'- -CGUcACGCU----UCGUGCgCUCG-----UCAC-GG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 43063 | 0.66 | 0.76362 |
Target: 5'- aCGGggucgGUGAGGaACGCGAGCccguUGCCg -3' miRNA: 3'- cGUCa----CGCUUCgUGCGCUCGuc--ACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 43955 | 0.71 | 0.448571 |
Target: 5'- gGCGauggGCGggGC-CGCcgccugaccgaGGGCGGUGCCg -3' miRNA: 3'- -CGUca--CGCuuCGuGCG-----------CUCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 44957 | 0.67 | 0.701306 |
Target: 5'- gGCAGUGCGGucaucGGgAUGCcgaGGGCcGGUGCg -3' miRNA: 3'- -CGUCACGCU-----UCgUGCG---CUCG-UCACGg -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 46068 | 0.71 | 0.467174 |
Target: 5'- -gAGcUGCucAAGCACcgccgggGCGAGCGGUGCCu -3' miRNA: 3'- cgUC-ACGc-UUCGUG-------CGCUCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 47037 | 0.66 | 0.773611 |
Target: 5'- aGCAG-GcCGggGaucuGCGCGAGC-GUGUUg -3' miRNA: 3'- -CGUCaC-GCuuCg---UGCGCUCGuCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 47173 | 0.67 | 0.669116 |
Target: 5'- cGUAGcgGCGAAGguCG---GCGGUGCCg -3' miRNA: 3'- -CGUCa-CGCUUCguGCgcuCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 47691 | 0.66 | 0.732905 |
Target: 5'- uGCA-UGCccGGUuggauGCGCG-GCAGUGCCu -3' miRNA: 3'- -CGUcACGcuUCG-----UGCGCuCGUCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 51277 | 0.71 | 0.438946 |
Target: 5'- aCGGUGCGcGGCAaGCG-GCAGcGCCc -3' miRNA: 3'- cGUCACGCuUCGUgCGCuCGUCaCGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 51667 | 0.68 | 0.614922 |
Target: 5'- cGCGG-GCGcgucgggcacGGGCGCGCGAugGUcucauaGGUGCCg -3' miRNA: 3'- -CGUCaCGC----------UUCGUGCGCU--CG------UCACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 52646 | 0.7 | 0.498349 |
Target: 5'- uGUGGgGCGAGGUgaGCGaCGAGCAuUGCCc -3' miRNA: 3'- -CGUCaCGCUUCG--UGC-GCUCGUcACGG- -5' |
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23516 | 5' | -55.6 | NC_005259.1 | + | 53414 | 0.71 | 0.448571 |
Target: 5'- gGCGGUucuGCGuAGCGCGacuuacgcagacUGAGCAgGUGCCa -3' miRNA: 3'- -CGUCA---CGCuUCGUGC------------GCUCGU-CACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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