miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23516 5' -55.6 NC_005259.1 + 46068 0.71 0.467174
Target:  5'- -gAGcUGCucAAGCACcgccgggGCGAGCGGUGCCu -3'
miRNA:   3'- cgUC-ACGc-UUCGUG-------CGCUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 44957 0.67 0.701306
Target:  5'- gGCAGUGCGGucaucGGgAUGCcgaGGGCcGGUGCg -3'
miRNA:   3'- -CGUCACGCU-----UCgUGCG---CUCG-UCACGg -5'
23516 5' -55.6 NC_005259.1 + 43955 0.71 0.448571
Target:  5'- gGCGauggGCGggGC-CGCcgccugaccgaGGGCGGUGCCg -3'
miRNA:   3'- -CGUca--CGCuuCGuGCG-----------CUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 43063 0.66 0.76362
Target:  5'- aCGGggucgGUGAGGaACGCGAGCccguUGCCg -3'
miRNA:   3'- cGUCa----CGCUUCgUGCGCUCGuc--ACGG- -5'
23516 5' -55.6 NC_005259.1 + 41897 0.66 0.76362
Target:  5'- cGCA-UGCGGgaugAGCGCGgGAGCucgaaGGUGaCCc -3'
miRNA:   3'- -CGUcACGCU----UCGUGCgCUCG-----UCAC-GG- -5'
23516 5' -55.6 NC_005259.1 + 41312 0.67 0.679894
Target:  5'- -gAGcGCGAGGUcgaccuCGaaaaGGGCGGUGCCg -3'
miRNA:   3'- cgUCaCGCUUCGu-----GCg---CUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 37976 0.73 0.366465
Target:  5'- gGCAGUGCGucGUACuGCGccuGC-GUGCCc -3'
miRNA:   3'- -CGUCACGCuuCGUG-CGCu--CGuCACGG- -5'
23516 5' -55.6 NC_005259.1 + 36533 0.7 0.508604
Target:  5'- cGCGGUGUGA--CACGCGGGguGaucUGCg -3'
miRNA:   3'- -CGUCACGCUucGUGCGCUCguC---ACGg -5'
23516 5' -55.6 NC_005259.1 + 36044 0.67 0.658305
Target:  5'- ----aGCGAGGCcacccGCGCGAGCAccaccugcuguGUGCUc -3'
miRNA:   3'- cgucaCGCUUCG-----UGCGCUCGU-----------CACGG- -5'
23516 5' -55.6 NC_005259.1 + 35672 0.71 0.468164
Target:  5'- cGCGGUGgUGguGCACaGCGAcGCcGUGCCc -3'
miRNA:   3'- -CGUCAC-GCuuCGUG-CGCU-CGuCACGG- -5'
23516 5' -55.6 NC_005259.1 + 33384 0.67 0.690627
Target:  5'- cCGGUccGCcGAGCGCGaCGAGCcGUGUCc -3'
miRNA:   3'- cGUCA--CGcUUCGUGC-GCUCGuCACGG- -5'
23516 5' -55.6 NC_005259.1 + 33093 0.67 0.701306
Target:  5'- uGUAG-GU-AGGCcCGCGAGC-GUGCCu -3'
miRNA:   3'- -CGUCaCGcUUCGuGCGCUCGuCACGG- -5'
23516 5' -55.6 NC_005259.1 + 32519 0.67 0.669116
Target:  5'- gGUAGU-CGAGGCGgGCG-GCAG-GCUu -3'
miRNA:   3'- -CGUCAcGCUUCGUgCGCuCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 31226 0.66 0.76362
Target:  5'- uCAGUcCGAugagaccauuGgGCGCG-GCGGUGCCg -3'
miRNA:   3'- cGUCAcGCUu---------CgUGCGCuCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 30896 0.72 0.410798
Target:  5'- cGCAaacGCGAGGUgugccgguugaGCGUGAGCAG-GCCa -3'
miRNA:   3'- -CGUca-CGCUUCG-----------UGCGCUCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 28973 0.71 0.438946
Target:  5'- uCGGUGcCGAGGC-CGCGAGCGcccgcuacgGCCa -3'
miRNA:   3'- cGUCAC-GCUUCGuGCGCUCGUca-------CGG- -5'
23516 5' -55.6 NC_005259.1 + 27994 0.66 0.76362
Target:  5'- gGUGGUGCGGGuGC-CG-GGGCGGggucGCCg -3'
miRNA:   3'- -CGUCACGCUU-CGuGCgCUCGUCa---CGG- -5'
23516 5' -55.6 NC_005259.1 + 27395 0.66 0.743257
Target:  5'- gGCGGUGuCGGcAGCG-GCGgcAGCucGGUGCCc -3'
miRNA:   3'- -CGUCAC-GCU-UCGUgCGC--UCG--UCACGG- -5'
23516 5' -55.6 NC_005259.1 + 27151 0.66 0.770628
Target:  5'- uGCGGUGuUGggGCcaacgaugccgucgGCGaUGAGCAG-GCUg -3'
miRNA:   3'- -CGUCAC-GCuuCG--------------UGC-GCUCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 26829 0.68 0.64747
Target:  5'- gGUGGUGcCGggGCggucuGCuCGGGCAGgaUGCCg -3'
miRNA:   3'- -CGUCAC-GCuuCG-----UGcGCUCGUC--ACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.