miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23516 5' -55.6 NC_005259.1 + 67951 0.82 0.101963
Target:  5'- uGCGGUGCGGguugugcuguAGCGCGCGcAGCGGcgugGCCa -3'
miRNA:   3'- -CGUCACGCU----------UCGUGCGC-UCGUCa---CGG- -5'
23516 5' -55.6 NC_005259.1 + 66255 0.66 0.76362
Target:  5'- cGCAGcGCGGccCGCGcCGGGCGGcgGCUc -3'
miRNA:   3'- -CGUCaCGCUucGUGC-GCUCGUCa-CGG- -5'
23516 5' -55.6 NC_005259.1 + 66107 0.69 0.550445
Target:  5'- cGCAcGcGCGAcuucuacGCGCGuCGAGCAG-GCCa -3'
miRNA:   3'- -CGU-CaCGCUu------CGUGC-GCUCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 65317 0.66 0.753499
Target:  5'- aGCuGUGCGAAGaguucgAUGuCGAGCugcuGUGCg -3'
miRNA:   3'- -CGuCACGCUUCg-----UGC-GCUCGu---CACGg -5'
23516 5' -55.6 NC_005259.1 + 60578 0.67 0.701306
Target:  5'- uCAG-GCGGccCACgGCGAGUcgGGUGCCg -3'
miRNA:   3'- cGUCaCGCUucGUG-CGCUCG--UCACGG- -5'
23516 5' -55.6 NC_005259.1 + 59385 0.69 0.571767
Target:  5'- cGCAccGUGCcuccGCGCGCGAGC-GUGaCCu -3'
miRNA:   3'- -CGU--CACGcuu-CGUGCGCUCGuCAC-GG- -5'
23516 5' -55.6 NC_005259.1 + 59131 0.69 0.550445
Target:  5'- aGCAGaGCGucGAGCucgGC-AGCGGUGCCg -3'
miRNA:   3'- -CGUCaCGC--UUCGug-CGcUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 57886 0.67 0.673432
Target:  5'- gGCGGUGCGcgacagaccccgcuuGAGaCGgauguugguCGCGAcCAGUGCCa -3'
miRNA:   3'- -CGUCACGC---------------UUC-GU---------GCGCUcGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 57454 0.68 0.60409
Target:  5'- -uGGUGCGAcGC-UGCG-GCAG-GCCg -3'
miRNA:   3'- cgUCACGCUuCGuGCGCuCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 57298 0.67 0.658305
Target:  5'- cGUAGUGCacgacaucGAGCAC-CG-GCGGUGUCg -3'
miRNA:   3'- -CGUCACGc-------UUCGUGcGCuCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 56180 0.68 0.614922
Target:  5'- aCGGUGcCGAcauacGCguuGCGCGAGCuGUGCUc -3'
miRNA:   3'- cGUCAC-GCUu----CG---UGCGCUCGuCACGG- -5'
23516 5' -55.6 NC_005259.1 + 53605 0.69 0.561078
Target:  5'- uGCucGU-CGggGUcagcagGCGuCGAGCGGUGCCg -3'
miRNA:   3'- -CGu-CAcGCuuCG------UGC-GCUCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 53562 0.66 0.722456
Target:  5'- gGCGGUGCGAuccgAGUAcggaacacCGUGAGguGUuCCu -3'
miRNA:   3'- -CGUCACGCU----UCGU--------GCGCUCguCAcGG- -5'
23516 5' -55.6 NC_005259.1 + 53414 0.71 0.448571
Target:  5'- gGCGGUucuGCGuAGCGCGacuuacgcagacUGAGCAgGUGCCa -3'
miRNA:   3'- -CGUCA---CGCuUCGUGC------------GCUCGU-CACGG- -5'
23516 5' -55.6 NC_005259.1 + 52646 0.7 0.498349
Target:  5'- uGUGGgGCGAGGUgaGCGaCGAGCAuUGCCc -3'
miRNA:   3'- -CGUCaCGCUUCG--UGC-GCUCGUcACGG- -5'
23516 5' -55.6 NC_005259.1 + 51667 0.68 0.614922
Target:  5'- cGCGG-GCGcgucgggcacGGGCGCGCGAugGUcucauaGGUGCCg -3'
miRNA:   3'- -CGUCaCGC----------UUCGUGCGCU--CG------UCACGG- -5'
23516 5' -55.6 NC_005259.1 + 51277 0.71 0.438946
Target:  5'- aCGGUGCGcGGCAaGCG-GCAGcGCCc -3'
miRNA:   3'- cGUCACGCuUCGUgCGCuCGUCaCGG- -5'
23516 5' -55.6 NC_005259.1 + 47691 0.66 0.732905
Target:  5'- uGCA-UGCccGGUuggauGCGCG-GCAGUGCCu -3'
miRNA:   3'- -CGUcACGcuUCG-----UGCGCuCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 47173 0.67 0.669116
Target:  5'- cGUAGcgGCGAAGguCG---GCGGUGCCg -3'
miRNA:   3'- -CGUCa-CGCUUCguGCgcuCGUCACGG- -5'
23516 5' -55.6 NC_005259.1 + 47037 0.66 0.773611
Target:  5'- aGCAG-GcCGggGaucuGCGCGAGC-GUGUUg -3'
miRNA:   3'- -CGUCaC-GCuuCg---UGCGCUCGuCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.