miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23534 3' -48.6 NC_005260.1 + 5463 0.67 0.999554
Target:  5'- aGAUCugcgauUUCGCAGU-GCAGCGgcucagGGUg -3'
miRNA:   3'- aCUAGu-----GAGUGUUAuCGUCGCaa----CCG- -5'
23534 3' -48.6 NC_005260.1 + 9359 0.7 0.990844
Target:  5'- ---aCGCUUuaaucuaugcguugACAAgggcaAGCAGCGUUGGCa -3'
miRNA:   3'- acuaGUGAG--------------UGUUa----UCGUCGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 24915 0.74 0.935574
Target:  5'- -uAUCACUgACGAcAGUuagaAGCGUUGGCg -3'
miRNA:   3'- acUAGUGAgUGUUaUCG----UCGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 25467 0.66 0.999778
Target:  5'- ----aGCg-ACGAUGGCcGCGUUGGCc -3'
miRNA:   3'- acuagUGagUGUUAUCGuCGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 34748 0.68 0.998182
Target:  5'- gGAUCACguuaGCAGaAGCaagAGCG-UGGCa -3'
miRNA:   3'- aCUAGUGag--UGUUaUCG---UCGCaACCG- -5'
23534 3' -48.6 NC_005260.1 + 41747 0.69 0.99577
Target:  5'- cGAaCACUCGCGAUGGUGcCGaUGGUa -3'
miRNA:   3'- aCUaGUGAGUGUUAUCGUcGCaACCG- -5'
23534 3' -48.6 NC_005260.1 + 43965 0.66 0.999865
Target:  5'- -aGUUGCUCACAggGUGGUguacGCGgUGGCg -3'
miRNA:   3'- acUAGUGAGUGU--UAUCGu---CGCaACCG- -5'
23534 3' -48.6 NC_005260.1 + 49259 0.68 0.997709
Target:  5'- aGAUCGCggauaCACAAUcaccGGCAGCGgUaugaacucucgcuaUGGCa -3'
miRNA:   3'- aCUAGUGa----GUGUUA----UCGUCGC-A--------------ACCG- -5'
23534 3' -48.6 NC_005260.1 + 53051 0.67 0.999636
Target:  5'- ---gCACUCGCAAUGGCAaacacccaaucaaGCcguucgauuauGUUGGCc -3'
miRNA:   3'- acuaGUGAGUGUUAUCGU-------------CG-----------CAACCG- -5'
23534 3' -48.6 NC_005260.1 + 58657 0.66 0.999718
Target:  5'- aUGAUCACUUACGgcaucAUGGCcAGCaaUUGGa -3'
miRNA:   3'- -ACUAGUGAGUGU-----UAUCG-UCGc-AACCg -5'
23534 3' -48.6 NC_005260.1 + 63894 0.68 0.998182
Target:  5'- cUGGUgACUCaaGCAAUGGCAGg--UGGUa -3'
miRNA:   3'- -ACUAgUGAG--UGUUAUCGUCgcaACCG- -5'
23534 3' -48.6 NC_005260.1 + 67007 1.14 0.010052
Target:  5'- uUGAUCACUCACAAUAGCAGCGUUGGCa -3'
miRNA:   3'- -ACUAGUGAGUGUUAUCGUCGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 67300 0.7 0.989947
Target:  5'- aUGGUCauaggacgACUCAUacuGAUAGCAGCGUgaGCa -3'
miRNA:   3'- -ACUAG--------UGAGUG---UUAUCGUCGCAacCG- -5'
23534 3' -48.6 NC_005260.1 + 68595 0.7 0.99426
Target:  5'- cUGG-CACUCGauaugAGCAGCaUUGGCa -3'
miRNA:   3'- -ACUaGUGAGUguua-UCGUCGcAACCG- -5'
23534 3' -48.6 NC_005260.1 + 77379 0.69 0.996938
Target:  5'- cGGUCAgaUUCGCG--GGCAGCcaUGGCu -3'
miRNA:   3'- aCUAGU--GAGUGUuaUCGUCGcaACCG- -5'
23534 3' -48.6 NC_005260.1 + 114286 0.67 0.999445
Target:  5'- cUGGUCAUUCugAAUGauucCAGCGUUGu- -3'
miRNA:   3'- -ACUAGUGAGugUUAUc---GUCGCAACcg -5'
23534 3' -48.6 NC_005260.1 + 114533 0.68 0.998748
Target:  5'- gGAUCgaACUCAC-AUGGC-GCGUUaGCa -3'
miRNA:   3'- aCUAG--UGAGUGuUAUCGuCGCAAcCG- -5'
23534 3' -48.6 NC_005260.1 + 132760 0.68 0.997788
Target:  5'- cUGcUCugUUAUcaugugaAAUccAGCAGCGUUGGCc -3'
miRNA:   3'- -ACuAGugAGUG-------UUA--UCGUCGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 133011 0.7 0.989947
Target:  5'- gGGUCuccaCACAAUAGCAGCGUUa-- -3'
miRNA:   3'- aCUAGuga-GUGUUAUCGUCGCAAccg -5'
23534 3' -48.6 NC_005260.1 + 135445 0.66 0.999865
Target:  5'- -uGUCAgUCACAAgAGaCGGCGcgGGUg -3'
miRNA:   3'- acUAGUgAGUGUUaUC-GUCGCaaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.