miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23534 3' -48.6 NC_005260.1 + 155982 0.66 0.999854
Target:  5'- gGAUUGCgCACca-GGCAGCGUggaaacuucgguagUGGCu -3'
miRNA:   3'- aCUAGUGaGUGuuaUCGUCGCA--------------ACCG- -5'
23534 3' -48.6 NC_005260.1 + 160865 0.7 0.989947
Target:  5'- uUGAUUACUCGCGcuuguacuAUGGCAGCagaaaucgagUGGUa -3'
miRNA:   3'- -ACUAGUGAGUGU--------UAUCGUCGca--------ACCG- -5'
23534 3' -48.6 NC_005260.1 + 163043 0.69 0.996393
Target:  5'- cGaAUCcaagCACAuUGGUAGCGUUGGUg -3'
miRNA:   3'- aC-UAGuga-GUGUuAUCGUCGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 164269 0.67 0.999644
Target:  5'- uUGA--GCUUugGuuuuguUGGCAGCGUuaaUGGCa -3'
miRNA:   3'- -ACUagUGAGugUu-----AUCGUCGCA---ACCG- -5'
23534 3' -48.6 NC_005260.1 + 165860 0.69 0.997414
Target:  5'- cGGUCACUCGCuugcgAGguGCGguaucUGcGCu -3'
miRNA:   3'- aCUAGUGAGUGuua--UCguCGCa----AC-CG- -5'
23534 3' -48.6 NC_005260.1 + 169294 0.69 0.99577
Target:  5'- cGAUCAgUgAUuuaccAGCAGaCGUUGGCa -3'
miRNA:   3'- aCUAGUgAgUGuua--UCGUC-GCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 186532 0.66 0.999826
Target:  5'- --uUCACUCuCAGUAagAGCGaUGGCa -3'
miRNA:   3'- acuAGUGAGuGUUAUcgUCGCaACCG- -5'
23534 3' -48.6 NC_005260.1 + 193890 0.67 0.999157
Target:  5'- aUGAuUCGCgUCGCAAUG--AGCGUUGcGCa -3'
miRNA:   3'- -ACU-AGUG-AGUGUUAUcgUCGCAAC-CG- -5'
23534 3' -48.6 NC_005260.1 + 197112 0.67 0.999644
Target:  5'- ----uGC-CACAgcuAUGGCcGCGUUGGCa -3'
miRNA:   3'- acuagUGaGUGU---UAUCGuCGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 207792 0.69 0.996393
Target:  5'- ---cUACUCAUAAU-GCAaCGUUGGCa -3'
miRNA:   3'- acuaGUGAGUGUUAuCGUcGCAACCG- -5'
23534 3' -48.6 NC_005260.1 + 219507 0.68 0.99897
Target:  5'- aGAaCACUCACAAccggAGCcGUGaUUGGUg -3'
miRNA:   3'- aCUaGUGAGUGUUa---UCGuCGC-AACCG- -5'
23534 3' -48.6 NC_005260.1 + 232630 0.72 0.976756
Target:  5'- uUGGUUGCUCugAA-AGCAcUGUUGGCg -3'
miRNA:   3'- -ACUAGUGAGugUUaUCGUcGCAACCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.