Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23534 | 3' | -48.6 | NC_005260.1 | + | 193890 | 0.67 | 0.999157 |
Target: 5'- aUGAuUCGCgUCGCAAUG--AGCGUUGcGCa -3' miRNA: 3'- -ACU-AGUG-AGUGUUAUcgUCGCAAC-CG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 114286 | 0.67 | 0.999445 |
Target: 5'- cUGGUCAUUCugAAUGauucCAGCGUUGu- -3' miRNA: 3'- -ACUAGUGAGugUUAUc---GUCGCAACcg -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 5463 | 0.67 | 0.999554 |
Target: 5'- aGAUCugcgauUUCGCAGU-GCAGCGgcucagGGUg -3' miRNA: 3'- aCUAGu-----GAGUGUUAuCGUCGCaa----CCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 53051 | 0.67 | 0.999636 |
Target: 5'- ---gCACUCGCAAUGGCAaacacccaaucaaGCcguucgauuauGUUGGCc -3' miRNA: 3'- acuaGUGAGUGUUAUCGU-------------CG-----------CAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 164269 | 0.67 | 0.999644 |
Target: 5'- uUGA--GCUUugGuuuuguUGGCAGCGUuaaUGGCa -3' miRNA: 3'- -ACUagUGAGugUu-----AUCGUCGCA---ACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 197112 | 0.67 | 0.999644 |
Target: 5'- ----uGC-CACAgcuAUGGCcGCGUUGGCa -3' miRNA: 3'- acuagUGaGUGU---UAUCGuCGCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 58657 | 0.66 | 0.999718 |
Target: 5'- aUGAUCACUUACGgcaucAUGGCcAGCaaUUGGa -3' miRNA: 3'- -ACUAGUGAGUGU-----UAUCG-UCGc-AACCg -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 25467 | 0.66 | 0.999778 |
Target: 5'- ----aGCg-ACGAUGGCcGCGUUGGCc -3' miRNA: 3'- acuagUGagUGUUAUCGuCGCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 186532 | 0.66 | 0.999826 |
Target: 5'- --uUCACUCuCAGUAagAGCGaUGGCa -3' miRNA: 3'- acuAGUGAGuGUUAUcgUCGCaACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 155982 | 0.66 | 0.999854 |
Target: 5'- gGAUUGCgCACca-GGCAGCGUggaaacuucgguagUGGCu -3' miRNA: 3'- aCUAGUGaGUGuuaUCGUCGCA--------------ACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 135445 | 0.66 | 0.999865 |
Target: 5'- -uGUCAgUCACAAgAGaCGGCGcgGGUg -3' miRNA: 3'- acUAGUgAGUGUUaUC-GUCGCaaCCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 43965 | 0.66 | 0.999865 |
Target: 5'- -aGUUGCUCACAggGUGGUguacGCGgUGGCg -3' miRNA: 3'- acUAGUGAGUGU--UAUCGu---CGCaACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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