Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23534 | 3' | -48.6 | NC_005260.1 | + | 207792 | 0.69 | 0.996393 |
Target: 5'- ---cUACUCAUAAU-GCAaCGUUGGCa -3' miRNA: 3'- acuaGUGAGUGUUAuCGUcGCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 163043 | 0.69 | 0.996393 |
Target: 5'- cGaAUCcaagCACAuUGGUAGCGUUGGUg -3' miRNA: 3'- aC-UAGuga-GUGUuAUCGUCGCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 41747 | 0.69 | 0.99577 |
Target: 5'- cGAaCACUCGCGAUGGUGcCGaUGGUa -3' miRNA: 3'- aCUaGUGAGUGUUAUCGUcGCaACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 169294 | 0.69 | 0.99577 |
Target: 5'- cGAUCAgUgAUuuaccAGCAGaCGUUGGCa -3' miRNA: 3'- aCUAGUgAgUGuua--UCGUC-GCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 68595 | 0.7 | 0.99426 |
Target: 5'- cUGG-CACUCGauaugAGCAGCaUUGGCa -3' miRNA: 3'- -ACUaGUGAGUguua-UCGUCGcAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 9359 | 0.7 | 0.990844 |
Target: 5'- ---aCGCUUuaaucuaugcguugACAAgggcaAGCAGCGUUGGCa -3' miRNA: 3'- acuaGUGAG--------------UGUUa----UCGUCGCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 133011 | 0.7 | 0.989947 |
Target: 5'- gGGUCuccaCACAAUAGCAGCGUUa-- -3' miRNA: 3'- aCUAGuga-GUGUUAUCGUCGCAAccg -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 160865 | 0.7 | 0.989947 |
Target: 5'- uUGAUUACUCGCGcuuguacuAUGGCAGCagaaaucgagUGGUa -3' miRNA: 3'- -ACUAGUGAGUGU--------UAUCGUCGca--------ACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 67300 | 0.7 | 0.989947 |
Target: 5'- aUGGUCauaggacgACUCAUacuGAUAGCAGCGUgaGCa -3' miRNA: 3'- -ACUAG--------UGAGUG---UUAUCGUCGCAacCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 232630 | 0.72 | 0.976756 |
Target: 5'- uUGGUUGCUCugAA-AGCAcUGUUGGCg -3' miRNA: 3'- -ACUAGUGAGugUUaUCGUcGCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 24915 | 0.74 | 0.935574 |
Target: 5'- -uAUCACUgACGAcAGUuagaAGCGUUGGCg -3' miRNA: 3'- acUAGUGAgUGUUaUCG----UCGCAACCG- -5' |
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23534 | 3' | -48.6 | NC_005260.1 | + | 67007 | 1.14 | 0.010052 |
Target: 5'- uUGAUCACUCACAAUAGCAGCGUUGGCa -3' miRNA: 3'- -ACUAGUGAGUGUUAUCGUCGCAACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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