miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23545 5' -48.3 NC_005260.1 + 93363 0.66 0.999946
Target:  5'- -cGCUUGAUGUAUGAgCGCAGuuuCUC-Ca -3'
miRNA:   3'- guCGAGCUGCAUAUUgGUGUU---GAGuG- -5'
23545 5' -48.3 NC_005260.1 + 130486 0.66 0.999928
Target:  5'- uCAGCUCGGCuUAUAucgaGCUucauGCAACUC-Cg -3'
miRNA:   3'- -GUCGAGCUGcAUAU----UGG----UGUUGAGuG- -5'
23545 5' -48.3 NC_005260.1 + 55230 0.66 0.999906
Target:  5'- -uGCUCGugGUAUcuauaaCGCAACUagCGCa -3'
miRNA:   3'- guCGAGCugCAUAuug---GUGUUGA--GUG- -5'
23545 5' -48.3 NC_005260.1 + 82291 0.66 0.999878
Target:  5'- uGGCUCGgacuauacaaucGCGUAUAGCCGCuauaUgACg -3'
miRNA:   3'- gUCGAGC------------UGCAUAUUGGUGuug-AgUG- -5'
23545 5' -48.3 NC_005260.1 + 63021 0.67 0.999744
Target:  5'- aCGuaUCGACGUAUGuuuCCGCGAaaUCGCa -3'
miRNA:   3'- -GUcgAGCUGCAUAUu--GGUGUUg-AGUG- -5'
23545 5' -48.3 NC_005260.1 + 78651 0.67 0.999677
Target:  5'- aAGUUUGGCGUAcUAACuCGCgAACUUGCg -3'
miRNA:   3'- gUCGAGCUGCAU-AUUG-GUG-UUGAGUG- -5'
23545 5' -48.3 NC_005260.1 + 60872 0.67 0.999594
Target:  5'- uCAGCUUGACGgcgaaGUAaucGCCAgCGAUUCAg -3'
miRNA:   3'- -GUCGAGCUGCa----UAU---UGGU-GUUGAGUg -5'
23545 5' -48.3 NC_005260.1 + 148045 0.67 0.999494
Target:  5'- gGGCUCuuuuUGUAUGuggaaCACGACUCGCa -3'
miRNA:   3'- gUCGAGcu--GCAUAUug---GUGUUGAGUG- -5'
23545 5' -48.3 NC_005260.1 + 86723 0.68 0.998825
Target:  5'- cCAGCUUGACGUccAUAACCGgaguuacCAACgUACu -3'
miRNA:   3'- -GUCGAGCUGCA--UAUUGGU-------GUUGaGUG- -5'
23545 5' -48.3 NC_005260.1 + 73473 0.69 0.997988
Target:  5'- aCAGCUCGAUGUuguACCAUAGacagaaaCACg -3'
miRNA:   3'- -GUCGAGCUGCAuauUGGUGUUga-----GUG- -5'
23545 5' -48.3 NC_005260.1 + 108794 0.69 0.997602
Target:  5'- ----aCGGCGUAUGaaACCGCAGCUCuACc -3'
miRNA:   3'- gucgaGCUGCAUAU--UGGUGUUGAG-UG- -5'
23545 5' -48.3 NC_005260.1 + 210660 0.69 0.997156
Target:  5'- aAGCUUGGaacaGUGUAAUCAUGACUC-Ca -3'
miRNA:   3'- gUCGAGCUg---CAUAUUGGUGUUGAGuG- -5'
23545 5' -48.3 NC_005260.1 + 185269 1 0.082977
Target:  5'- cCAGCUCGACGUuaAACCACAACUCACg -3'
miRNA:   3'- -GUCGAGCUGCAuaUUGGUGUUGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.