miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23550 3' -51.3 NC_005260.1 + 181772 0.66 0.997685
Target:  5'- uGCCGCGAACaacagAGCUaUCCaguucuuuagcgaaACGCaGACc -3'
miRNA:   3'- gUGGCGCUUG-----UCGAaAGG--------------UGCGaUUG- -5'
23550 3' -51.3 NC_005260.1 + 191367 0.66 0.995779
Target:  5'- aCACCGCGAuugauucgguggGCaucucgauAGUUUUCCAUGCa--- -3'
miRNA:   3'- -GUGGCGCU------------UG--------UCGAAAGGUGCGauug -5'
23550 3' -51.3 NC_005260.1 + 179954 0.67 0.992442
Target:  5'- gCACCGCGAaacuuaGCAGCggUaCCACucaUAGCa -3'
miRNA:   3'- -GUGGCGCU------UGUCGaaA-GGUGcg-AUUG- -5'
23550 3' -51.3 NC_005260.1 + 69980 0.67 0.991344
Target:  5'- uCACC-CGGcaagACAGUUcgUUCCACGCUGu- -3'
miRNA:   3'- -GUGGcGCU----UGUCGA--AAGGUGCGAUug -5'
23550 3' -51.3 NC_005260.1 + 181941 0.68 0.987281
Target:  5'- -uUCGUGAcCGGCaUUCCAUGCuUGACg -3'
miRNA:   3'- guGGCGCUuGUCGaAAGGUGCG-AUUG- -5'
23550 3' -51.3 NC_005260.1 + 15743 0.68 0.987281
Target:  5'- aCACCGCGAuaucguuacgACGGUcgauaucUUCUugGCUGAUu -3'
miRNA:   3'- -GUGGCGCU----------UGUCGa------AAGGugCGAUUG- -5'
23550 3' -51.3 NC_005260.1 + 51166 0.69 0.977435
Target:  5'- gACCaCGAacauacuuaguaGCAGCUUUCCAacCGUUGGCu -3'
miRNA:   3'- gUGGcGCU------------UGUCGAAAGGU--GCGAUUG- -5'
23550 3' -51.3 NC_005260.1 + 204523 0.69 0.969321
Target:  5'- uGCCGCGAAuCAGCUUguugaaacugUUCGUGCUGAUu -3'
miRNA:   3'- gUGGCGCUU-GUCGAA----------AGGUGCGAUUG- -5'
23550 3' -51.3 NC_005260.1 + 58082 0.82 0.455441
Target:  5'- -uUCGCGAACAGC-UUCCACGCUuuCg -3'
miRNA:   3'- guGGCGCUUGUCGaAAGGUGCGAuuG- -5'
23550 3' -51.3 NC_005260.1 + 203939 1.1 0.009364
Target:  5'- uCACCGCGAACAGCUUUCCACGCUAACg -3'
miRNA:   3'- -GUGGCGCUUGUCGAAAGGUGCGAUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.