miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23554 3' -46.5 NC_005260.1 + 126755 0.66 0.999987
Target:  5'- --gUAAGCGGCAGUCcaguCUucacGUGCCAu- -3'
miRNA:   3'- aauGUUCGCUGUUAGu---GA----UACGGUuu -5'
23554 3' -46.5 NC_005260.1 + 10905 0.66 0.999982
Target:  5'- uUUACGAGCGccACGAUCAUUccacUGUCGAGu -3'
miRNA:   3'- -AAUGUUCGC--UGUUAGUGAu---ACGGUUU- -5'
23554 3' -46.5 NC_005260.1 + 176979 0.66 0.999982
Target:  5'- -----cGCGGCAAUCGCUuucaaaAUGUCGAAu -3'
miRNA:   3'- aauguuCGCUGUUAGUGA------UACGGUUU- -5'
23554 3' -46.5 NC_005260.1 + 116243 0.66 0.999954
Target:  5'- -aACGAGCGGCAGUauCUuUGCCGc- -3'
miRNA:   3'- aaUGUUCGCUGUUAguGAuACGGUuu -5'
23554 3' -46.5 NC_005260.1 + 148341 0.67 0.999917
Target:  5'- -aGCGAGuUGACuAUCACgAUGCCAc- -3'
miRNA:   3'- aaUGUUC-GCUGuUAGUGaUACGGUuu -5'
23554 3' -46.5 NC_005260.1 + 229546 0.68 0.999511
Target:  5'- -aGCAAGCGGCAuccAUCGCa--GCCAu- -3'
miRNA:   3'- aaUGUUCGCUGU---UAGUGauaCGGUuu -5'
23554 3' -46.5 NC_005260.1 + 98565 0.69 0.999388
Target:  5'- aUUACAAGCGACugcaaGCUGaauucgGCCAAAu -3'
miRNA:   3'- -AAUGUUCGCUGuuag-UGAUa-----CGGUUU- -5'
23554 3' -46.5 NC_005260.1 + 178133 0.69 0.99906
Target:  5'- aUACAcucugccgaacGGCGGCAAauuCUAUGCCAAGa -3'
miRNA:   3'- aAUGU-----------UCGCUGUUaguGAUACGGUUU- -5'
23554 3' -46.5 NC_005260.1 + 30329 0.7 0.997043
Target:  5'- -aGCGGGCGACAaacucGUUAUUAUGCgAAAc -3'
miRNA:   3'- aaUGUUCGCUGU-----UAGUGAUACGgUUU- -5'
23554 3' -46.5 NC_005260.1 + 98211 0.72 0.988302
Target:  5'- -aGCAAGCGAUAGUCGCacAUGCgAAc -3'
miRNA:   3'- aaUGUUCGCUGUUAGUGa-UACGgUUu -5'
23554 3' -46.5 NC_005260.1 + 201562 0.73 0.978292
Target:  5'- -aGCGAGCGACuGAUCuacgcaUGUGCCGAAa -3'
miRNA:   3'- aaUGUUCGCUG-UUAGug----AUACGGUUU- -5'
23554 3' -46.5 NC_005260.1 + 228389 0.8 0.780057
Target:  5'- --uCGAGUGGCAAUCAUUGUGCCGu- -3'
miRNA:   3'- aauGUUCGCUGUUAGUGAUACGGUuu -5'
23554 3' -46.5 NC_005260.1 + 228096 1.04 0.051628
Target:  5'- gUUACAAGCGACAAUCACUAUGCCAAAc -3'
miRNA:   3'- -AAUGUUCGCUGUUAGUGAUACGGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.