miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23555 5' -53.3 NC_005260.1 + 118353 0.66 0.982447
Target:  5'- uGGUCAaauGGCAAGCGGUAUCgaAUCc -3'
miRNA:   3'- uUCGGUaguUCGUUCGCCGUAGg-UAG- -5'
23555 5' -53.3 NC_005260.1 + 57416 0.66 0.980344
Target:  5'- gAAGgUAUCAAGUucGAGCGGUA-CCGUg -3'
miRNA:   3'- -UUCgGUAGUUCG--UUCGCCGUaGGUAg -5'
23555 5' -53.3 NC_005260.1 + 98326 0.67 0.966935
Target:  5'- -cGCgAUCAAGCAAGCGuuuCGUCUuggAUCa -3'
miRNA:   3'- uuCGgUAGUUCGUUCGCc--GUAGG---UAG- -5'
23555 5' -53.3 NC_005260.1 + 115461 0.67 0.960087
Target:  5'- -uGCCugaguuUCAAGCAAGCGGUaagAUCgAUa -3'
miRNA:   3'- uuCGGu-----AGUUCGUUCGCCG---UAGgUAg -5'
23555 5' -53.3 NC_005260.1 + 125968 0.67 0.960087
Target:  5'- uGGCgGUCAAGCAggcAGCGGUAguUCUggCa -3'
miRNA:   3'- uUCGgUAGUUCGU---UCGCCGU--AGGuaG- -5'
23555 5' -53.3 NC_005260.1 + 84770 0.67 0.95232
Target:  5'- uGGUCAUCAucGC-AGCGGCAUaagCCAUUu -3'
miRNA:   3'- uUCGGUAGUu-CGuUCGCCGUA---GGUAG- -5'
23555 5' -53.3 NC_005260.1 + 213502 0.68 0.938869
Target:  5'- uGGgCAUCA---GAGCaGGCAUCCGUCg -3'
miRNA:   3'- uUCgGUAGUucgUUCG-CCGUAGGUAG- -5'
23555 5' -53.3 NC_005260.1 + 206016 0.68 0.93079
Target:  5'- gAAGUCAUCAGcagcGCGAGCguuagaacgcuucucGGCAcCCAUCa -3'
miRNA:   3'- -UUCGGUAGUU----CGUUCG---------------CCGUaGGUAG- -5'
23555 5' -53.3 NC_005260.1 + 28946 0.69 0.923199
Target:  5'- cGAGUgGUCAAGCAGuuacaUGGCGUCCAg- -3'
miRNA:   3'- -UUCGgUAGUUCGUUc----GCCGUAGGUag -5'
23555 5' -53.3 NC_005260.1 + 9630 0.71 0.81295
Target:  5'- cAAGCuaaCAUCAAGCAAGuUGGCAUCgAUa -3'
miRNA:   3'- -UUCG---GUAGUUCGUUC-GCCGUAGgUAg -5'
23555 5' -53.3 NC_005260.1 + 174148 0.72 0.794813
Target:  5'- uGAGCCGaUGAuCAAGCGGCAaguUCCGUCu -3'
miRNA:   3'- -UUCGGUaGUUcGUUCGCCGU---AGGUAG- -5'
23555 5' -53.3 NC_005260.1 + 229537 0.95 0.045757
Target:  5'- gAAG-CAUCAAGCAAGCGGCAUCCAUCg -3'
miRNA:   3'- -UUCgGUAGUUCGUUCGCCGUAGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.