Results 61 - 80 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23557 | 5' | -58.2 | NC_005261.1 | + | 113287 | 0.68 | 0.640427 |
Target: 5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3' miRNA: 3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 414 | 0.68 | 0.640427 |
Target: 5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3' miRNA: 3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 57666 | 0.68 | 0.640427 |
Target: 5'- aAGGAGCCUGUCUcgcggaacuuuCUGCGCACCcAGc- -3' miRNA: 3'- -UUCUUGGACGGG-----------GACGCGUGGuUCcu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 8770 | 0.68 | 0.640427 |
Target: 5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3' miRNA: 3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 33580 | 0.68 | 0.640427 |
Target: 5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3' miRNA: 3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 138097 | 0.68 | 0.640427 |
Target: 5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3' miRNA: 3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 17046 | 0.68 | 0.640427 |
Target: 5'- -cGGGCCcgGCCCCggccccGUGCACCGAGc- -3' miRNA: 3'- uuCUUGGa-CGGGGa-----CGCGUGGUUCcu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 11348 | 0.68 | 0.650773 |
Target: 5'- cGAGGGCCcugcGCUgCUGCGgGCCAuGGAg -3' miRNA: 3'- -UUCUUGGa---CGGgGACGCgUGGUuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 50575 | 0.68 | 0.661103 |
Target: 5'- -cGGugCUGCCCCuggUGCGCgggcucACCGuGGAg -3' miRNA: 3'- uuCUugGACGGGG---ACGCG------UGGUuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 15258 | 0.68 | 0.661103 |
Target: 5'- -uGGGCCgcgaucGCCCCggcgGCGCcGCCGGGGc -3' miRNA: 3'- uuCUUGGa-----CGGGGa---CGCG-UGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 62834 | 0.68 | 0.661103 |
Target: 5'- -cGGGCC-GCgCCCUcgucgauggcGCGCGCCAGGGc -3' miRNA: 3'- uuCUUGGaCG-GGGA----------CGCGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 99512 | 0.67 | 0.671409 |
Target: 5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3' miRNA: 3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78533 | 0.67 | 0.691913 |
Target: 5'- -cGggUCUGCCCggaGCGCgugcugGCCGAGGGc -3' miRNA: 3'- uuCuuGGACGGGga-CGCG------UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 35109 | 0.67 | 0.691913 |
Target: 5'- gGAGAACCcggGCgCgCUG-GCGCCGGGGGc -3' miRNA: 3'- -UUCUUGGa--CGgG-GACgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 49366 | 0.67 | 0.702094 |
Target: 5'- gGAGAGgCUGUCCCgcgagGCGCgGCCcAGGu -3' miRNA: 3'- -UUCUUgGACGGGGa----CGCG-UGGuUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 44281 | 0.67 | 0.712215 |
Target: 5'- cGGGGCCcGCCgCCagcgGCGgGCCAGGGc -3' miRNA: 3'- uUCUUGGaCGG-GGa---CGCgUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 29105 | 0.67 | 0.712215 |
Target: 5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3' miRNA: 3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 93964 | 0.67 | 0.712215 |
Target: 5'- -cGGGCCccGCCCCcccGCGCGCCGcGGc -3' miRNA: 3'- uuCUUGGa-CGGGGa--CGCGUGGUuCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 133623 | 0.67 | 0.712215 |
Target: 5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3' miRNA: 3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 79158 | 0.67 | 0.722265 |
Target: 5'- cGAGcACCagcaGCCCCguggccaGCGCGCCgAAGGGg -3' miRNA: 3'- -UUCuUGGa---CGGGGa------CGCGUGG-UUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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