miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 75694 0.71 0.441561
Target:  5'- cGAGGACCagaGCCUgCUGCGCGCCAcGGu -3'
miRNA:   3'- -UUCUUGGa--CGGG-GACGCGUGGUuCCu -5'
23557 5' -58.2 NC_005261.1 + 78059 0.66 0.751904
Target:  5'- -cGGGCCcgGCCCCcGCGCcgGCCcAGGc -3'
miRNA:   3'- uuCUUGGa-CGGGGaCGCG--UGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 78231 0.66 0.742119
Target:  5'- ----cCCUGCCCgUcGCGCugcCCGAGGGu -3'
miRNA:   3'- uucuuGGACGGGgA-CGCGu--GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 78533 0.67 0.691913
Target:  5'- -cGggUCUGCCCggaGCGCgugcugGCCGAGGGc -3'
miRNA:   3'- uuCuuGGACGGGga-CGCG------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 79158 0.67 0.722265
Target:  5'- cGAGcACCagcaGCCCCguggccaGCGCGCCgAAGGGg -3'
miRNA:   3'- -UUCuUGGa---CGGGGa------CGCGUGG-UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 79364 0.75 0.27577
Target:  5'- -cGGACCUGCCCCaGCGCuuCCAcuacgacgugcGGGAg -3'
miRNA:   3'- uuCUUGGACGGGGaCGCGu-GGU-----------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 82950 0.71 0.47901
Target:  5'- cAGcGCCcccGCCUCcgGCGCGCCAGGGGg -3'
miRNA:   3'- uUCuUGGa--CGGGGa-CGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 82990 0.66 0.742119
Target:  5'- cGGAGgCgGCCgCCUcGCGCACCGAGc- -3'
miRNA:   3'- uUCUUgGaCGG-GGA-CGCGUGGUUCcu -5'
23557 5' -58.2 NC_005261.1 + 83540 0.67 0.722265
Target:  5'- -cGAGCUgcgGCCUC-GCGCACCu-GGAc -3'
miRNA:   3'- uuCUUGGa--CGGGGaCGCGUGGuuCCU- -5'
23557 5' -58.2 NC_005261.1 + 86310 0.7 0.527886
Target:  5'- cGGGACCaggccgcgGCCgCUGCGCGCCcGGGc -3'
miRNA:   3'- uUCUUGGa-------CGGgGACGCGUGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 88115 0.69 0.547962
Target:  5'- -uGGACCUGCuggcggCCCUGCGCGgCGcGGGc -3'
miRNA:   3'- uuCUUGGACG------GGGACGCGUgGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 90011 0.68 0.609385
Target:  5'- ---cACCUGCCUgCUGCGCcugGCCcGGGAg -3'
miRNA:   3'- uucuUGGACGGG-GACGCG---UGGuUCCU- -5'
23557 5' -58.2 NC_005261.1 + 90055 0.66 0.751904
Target:  5'- cGGAcaGCCagcggcGCCCCgcGgGCGCCGAGGGc -3'
miRNA:   3'- uUCU--UGGa-----CGGGGa-CgCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 92515 0.66 0.76158
Target:  5'- uGGuACaCUGCgucgcggaacCCCUGCGCGgCGAGGGg -3'
miRNA:   3'- uUCuUG-GACG----------GGGACGCGUgGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 93442 0.69 0.594939
Target:  5'- uGAGGGCCguggccagcaccgGCCCCaGCGCgguGCCGGGGc -3'
miRNA:   3'- -UUCUUGGa------------CGGGGaCGCG---UGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 93964 0.67 0.712215
Target:  5'- -cGGGCCccGCCCCcccGCGCGCCGcGGc -3'
miRNA:   3'- uuCUUGGa-CGGGGa--CGCGUGGUuCCu -5'
23557 5' -58.2 NC_005261.1 + 97428 0.7 0.488615
Target:  5'- -cGGGCCUGCCCUUGgGCGCgGgucuGGGc -3'
miRNA:   3'- uuCUUGGACGGGGACgCGUGgUu---CCU- -5'
23557 5' -58.2 NC_005261.1 + 98791 0.66 0.732237
Target:  5'- cGGAGgCUcggGCCCUgcgGaCGCGCCGGGGGa -3'
miRNA:   3'- uUCUUgGA---CGGGGa--C-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 99512 0.67 0.671409
Target:  5'- cGAGGGCCcGCCCgUugcGUGCACCGucgAGGGc -3'
miRNA:   3'- -UUCUUGGaCGGGgA---CGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 101822 0.69 0.588764
Target:  5'- ---cGCCUGCCCCaucccgcuaUGUGgGCCAGGGc -3'
miRNA:   3'- uucuUGGACGGGG---------ACGCgUGGUUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.