miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 47255 0.66 0.76158
Target:  5'- cGAGGACCUGCgCCgGCcCGCCGGcGAa -3'
miRNA:   3'- -UUCUUGGACGgGGaCGcGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 48809 0.7 0.50809
Target:  5'- gGGGAGCCcggcgGCCgCgcaCGCGCCGAGGAa -3'
miRNA:   3'- -UUCUUGGa----CGGgGac-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 49366 0.67 0.702094
Target:  5'- gGAGAGgCUGUCCCgcgagGCGCgGCCcAGGu -3'
miRNA:   3'- -UUCUUgGACGGGGa----CGCG-UGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 50575 0.68 0.661103
Target:  5'- -cGGugCUGCCCCuggUGCGCgggcucACCGuGGAg -3'
miRNA:   3'- uuCUugGACGGGG---ACGCG------UGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 52012 0.68 0.619725
Target:  5'- cGGcACCggcUGCCCCgguucgGCGCGCCGAcgcGGAg -3'
miRNA:   3'- uUCuUGG---ACGGGGa-----CGCGUGGUU---CCU- -5'
23557 5' -58.2 NC_005261.1 + 53947 0.69 0.55809
Target:  5'- cGGGGCCgggGCCgccggcggcaCCUGCGCcauGCCGGGGGc -3'
miRNA:   3'- uUCUUGGa--CGG----------GGACGCG---UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 55260 0.66 0.742119
Target:  5'- cGAGGAggUCUGCgCCCccugGCGCGCCGgaggcGGGGg -3'
miRNA:   3'- -UUCUU--GGACG-GGGa---CGCGUGGU-----UCCU- -5'
23557 5' -58.2 NC_005261.1 + 56304 0.7 0.537892
Target:  5'- -uGGGCCUGCUCC--CGCACCucAAGGAg -3'
miRNA:   3'- uuCUUGGACGGGGacGCGUGG--UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 57666 0.68 0.640427
Target:  5'- aAGGAGCCUGUCUcgcggaacuuuCUGCGCACCcAGc- -3'
miRNA:   3'- -UUCUUGGACGGG-----------GACGCGUGGuUCcu -5'
23557 5' -58.2 NC_005261.1 + 57870 0.7 0.527886
Target:  5'- cAGAACgUGCCgcuagcgaCUGCGUgACCGAGGAg -3'
miRNA:   3'- uUCUUGgACGGg-------GACGCG-UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 58346 0.66 0.751904
Target:  5'- aAGGAGC--GCgCCCUGUGgGCCGAGGc -3'
miRNA:   3'- -UUCUUGgaCG-GGGACGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 58769 0.66 0.742119
Target:  5'- cGAGAGC--GCCCCcaGCGCGCCGgccagcgcgcgcAGGAa -3'
miRNA:   3'- -UUCUUGgaCGGGGa-CGCGUGGU------------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 59434 0.7 0.49831
Target:  5'- gGGGAGCCgugagagggaGCCCCUGCG-GCgGGGGAg -3'
miRNA:   3'- -UUCUUGGa---------CGGGGACGCgUGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 61887 0.72 0.405827
Target:  5'- uGGGcGCCUucucGCCCgUGCGCACCAccgAGGGc -3'
miRNA:   3'- -UUCuUGGA----CGGGgACGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 62834 0.68 0.661103
Target:  5'- -cGGGCC-GCgCCCUcgucgauggcGCGCGCCAGGGc -3'
miRNA:   3'- uuCUUGGaCG-GGGA----------CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 69005 0.68 0.609385
Target:  5'- -cGAACC-GCCCCaGCGCGCaCAgcucccggAGGAc -3'
miRNA:   3'- uuCUUGGaCGGGGaCGCGUG-GU--------UCCU- -5'
23557 5' -58.2 NC_005261.1 + 69854 0.66 0.742119
Target:  5'- -uGAGCaCaGCCCCgagGCGaCGCCGAGcGAc -3'
miRNA:   3'- uuCUUG-GaCGGGGa--CGC-GUGGUUC-CU- -5'
23557 5' -58.2 NC_005261.1 + 73705 0.66 0.751904
Target:  5'- -cGGACCUGCCCCc-CGa--CGAGGAg -3'
miRNA:   3'- uuCUUGGACGGGGacGCgugGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 74646 0.66 0.732237
Target:  5'- uGGGACgaGCCCgUcuucGCGCagGCCGGGGAc -3'
miRNA:   3'- uUCUUGgaCGGGgA----CGCG--UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 75153 0.66 0.76158
Target:  5'- gGAGGcguACCcGCCgCUGUGCGCCAGcGAc -3'
miRNA:   3'- -UUCU---UGGaCGGgGACGCGUGGUUcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.