Results 41 - 60 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23557 | 5' | -58.2 | NC_005261.1 | + | 11348 | 0.68 | 0.650773 |
Target: 5'- cGAGGGCCcugcGCUgCUGCGgGCCAuGGAg -3' miRNA: 3'- -UUCUUGGa---CGGgGACGCgUGGUuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 50575 | 0.68 | 0.661103 |
Target: 5'- -cGGugCUGCCCCuggUGCGCgggcucACCGuGGAg -3' miRNA: 3'- uuCUugGACGGGG---ACGCG------UGGUuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 62834 | 0.68 | 0.661103 |
Target: 5'- -cGGGCC-GCgCCCUcgucgauggcGCGCGCCAGGGc -3' miRNA: 3'- uuCUUGGaCG-GGGA----------CGCGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 35109 | 0.67 | 0.691913 |
Target: 5'- gGAGAACCcggGCgCgCUG-GCGCCGGGGGc -3' miRNA: 3'- -UUCUUGGa--CGgG-GACgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78533 | 0.67 | 0.691913 |
Target: 5'- -cGggUCUGCCCggaGCGCgugcugGCCGAGGGc -3' miRNA: 3'- uuCuuGGACGGGga-CGCG------UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 49366 | 0.67 | 0.702094 |
Target: 5'- gGAGAGgCUGUCCCgcgagGCGCgGCCcAGGu -3' miRNA: 3'- -UUCUUgGACGGGGa----CGCG-UGGuUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 93964 | 0.67 | 0.712215 |
Target: 5'- -cGGGCCccGCCCCcccGCGCGCCGcGGc -3' miRNA: 3'- uuCUUGGa-CGGGGa--CGCGUGGUuCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 133623 | 0.67 | 0.712215 |
Target: 5'- cGGGGACCgacGCcgaggggagCCCUG-GCGCCGGGGGg -3' miRNA: 3'- -UUCUUGGa--CG---------GGGACgCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 83540 | 0.67 | 0.722265 |
Target: 5'- -cGAGCUgcgGCCUC-GCGCACCu-GGAc -3' miRNA: 3'- uuCUUGGa--CGGGGaCGCGUGGuuCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 98791 | 0.66 | 0.732237 |
Target: 5'- cGGAGgCUcggGCCCUgcgGaCGCGCCGGGGGa -3' miRNA: 3'- uUCUUgGA---CGGGGa--C-GCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 37947 | 0.66 | 0.736201 |
Target: 5'- uGGGGCCUucugccgcuucgugcGCCaCCgGCGCGCCGacuGGGGg -3' miRNA: 3'- uUCUUGGA---------------CGG-GGaCGCGUGGU---UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 4072 | 0.66 | 0.740151 |
Target: 5'- cGGGAGCagcaGCCCCggguggcgccagGCGCAgcCCAGGGGg -3' miRNA: 3'- -UUCUUGga--CGGGGa-----------CGCGU--GGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 69854 | 0.66 | 0.742119 |
Target: 5'- -uGAGCaCaGCCCCgagGCGaCGCCGAGcGAc -3' miRNA: 3'- uuCUUG-GaCGGGGa--CGC-GUGGUUC-CU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 78231 | 0.66 | 0.742119 |
Target: 5'- ----cCCUGCCCgUcGCGCugcCCGAGGGu -3' miRNA: 3'- uucuuGGACGGGgA-CGCGu--GGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 122953 | 0.66 | 0.742119 |
Target: 5'- --cGACCgcgcGCCCCggcgGCGCcGCCGGGGc -3' miRNA: 3'- uucUUGGa---CGGGGa---CGCG-UGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 58346 | 0.66 | 0.751904 |
Target: 5'- aAGGAGC--GCgCCCUGUGgGCCGAGGc -3' miRNA: 3'- -UUCUUGgaCG-GGGACGCgUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 73705 | 0.66 | 0.751904 |
Target: 5'- -cGGACCUGCCCCc-CGa--CGAGGAg -3' miRNA: 3'- uuCUUGGACGGGGacGCgugGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 92515 | 0.66 | 0.76158 |
Target: 5'- uGGuACaCUGCgucgcggaacCCCUGCGCGgCGAGGGg -3' miRNA: 3'- uUCuUG-GACG----------GGGACGCGUgGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 75153 | 0.66 | 0.76158 |
Target: 5'- gGAGGcguACCcGCCgCUGUGCGCCAGcGAc -3' miRNA: 3'- -UUCU---UGGaCGGgGACGCGUGGUUcCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 133234 | 0.66 | 0.76158 |
Target: 5'- gGGGGGCCcggggGCCUCgGCGCccuCCGAGGc -3' miRNA: 3'- -UUCUUGGa----CGGGGaCGCGu--GGUUCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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