miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 62834 0.68 0.661103
Target:  5'- -cGGGCC-GCgCCCUcgucgauggcGCGCGCCAGGGc -3'
miRNA:   3'- uuCUUGGaCG-GGGA----------CGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 50575 0.68 0.661103
Target:  5'- -cGGugCUGCCCCuggUGCGCgggcucACCGuGGAg -3'
miRNA:   3'- uuCUugGACGGGG---ACGCG------UGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 11348 0.68 0.650773
Target:  5'- cGAGGGCCcugcGCUgCUGCGgGCCAuGGAg -3'
miRNA:   3'- -UUCUUGGa---CGGgGACGCgUGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 17046 0.68 0.640427
Target:  5'- -cGGGCCcgGCCCCggccccGUGCACCGAGc- -3'
miRNA:   3'- uuCUUGGa-CGGGGa-----CGCGUGGUUCcu -5'
23557 5' -58.2 NC_005261.1 + 138097 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 113287 0.68 0.640427
Target:  5'- uGGGAACCgugccagcucUGCCCCUcgGCGgcugcagcCGCCGAGGGc -3'
miRNA:   3'- -UUCUUGG----------ACGGGGA--CGC--------GUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 414 0.68 0.640427
Target:  5'- ---uGCCaGCCCCgcgaGCACCAGGGGc -3'
miRNA:   3'- uucuUGGaCGGGGacg-CGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 57666 0.68 0.640427
Target:  5'- aAGGAGCCUGUCUcgcggaacuuuCUGCGCACCcAGc- -3'
miRNA:   3'- -UUCUUGGACGGG-----------GACGCGUGGuUCcu -5'
23557 5' -58.2 NC_005261.1 + 117609 0.68 0.630076
Target:  5'- -cGGGCCggcaGUCCCggaUGCGgGCCAGGGGc -3'
miRNA:   3'- uuCUUGGa---CGGGG---ACGCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 52012 0.68 0.619725
Target:  5'- cGGcACCggcUGCCCCgguucgGCGCGCCGAcgcGGAg -3'
miRNA:   3'- uUCuUGG---ACGGGGa-----CGCGUGGUU---CCU- -5'
23557 5' -58.2 NC_005261.1 + 39568 0.68 0.619725
Target:  5'- cGGAGCCcGCCCUcgccugGgGgGCCGAGGAg -3'
miRNA:   3'- uUCUUGGaCGGGGa-----CgCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 19862 0.71 0.432459
Target:  5'- -cGGGCCgcgcGCCCCaGCGCccggccgagagGCCGAGGAg -3'
miRNA:   3'- uuCUUGGa---CGGGGaCGCG-----------UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 37622 0.7 0.51795
Target:  5'- cGGGACCUGCaCCUGCGCgGCCGcguGGc -3'
miRNA:   3'- uUCUUGGACGgGGACGCG-UGGUu--CCu -5'
23557 5' -58.2 NC_005261.1 + 48809 0.7 0.50809
Target:  5'- gGGGAGCCcggcgGCCgCgcaCGCGCCGAGGAa -3'
miRNA:   3'- -UUCUUGGa----CGGgGac-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 59434 0.7 0.49831
Target:  5'- gGGGAGCCgugagagggaGCCCCUGCG-GCgGGGGAg -3'
miRNA:   3'- -UUCUUGGa---------CGGGGACGCgUGgUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 104486 0.7 0.488615
Target:  5'- -cGGGCCcgGCCCCgGCGCcGCgCGAGGGg -3'
miRNA:   3'- uuCUUGGa-CGGGGaCGCG-UG-GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 82950 0.71 0.47901
Target:  5'- cAGcGCCcccGCCUCcgGCGCGCCAGGGGg -3'
miRNA:   3'- uUCuUGGa--CGGGGa-CGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 119088 0.71 0.469498
Target:  5'- -----gCUGgCCgUGCGCGCCGAGGAg -3'
miRNA:   3'- uucuugGACgGGgACGCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 29070 0.71 0.441561
Target:  5'- gGAGAACCUGCCCggccuggugCUGUGgCGCCugccuGGGGc -3'
miRNA:   3'- -UUCUUGGACGGG---------GACGC-GUGGu----UCCU- -5'
23557 5' -58.2 NC_005261.1 + 12886 0.79 0.15144
Target:  5'- cGGAGCCUGCuggacgCCCUGCGCGCUgcGGAc -3'
miRNA:   3'- uUCUUGGACG------GGGACGCGUGGuuCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.